Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0893 ATGGCCAGTATTAAGTTTTTGTACATTGCGTCCGTACTCTCAGTTTTCTTGGCGGTGGAAGCGAGAATCCCCGGAGTTTACTCCGGCAGCCCATGGCAGGACGCCCACGCCACATTCTACGGCGGATCTGACGCTTCCGGCACTATGGGTGGAGCTTGCGGGTACGGAAATTTGTACAGCCAAGGGTATGGAGTTAATACGGCGGCGCTGAGTACGGCCCTGTTCAATAGTGGGCAGAGCTGCGGCGCTTGCTTTGAGATCAAGTGCGCGAATGACCCGCGGTGGTGCCATTCCGGTAGCCCGTCCATTTTAGTCACCGCCACCAACTTCTGCCCGCCGAACTACGCCCTCCCCAACGACAATGGCGGCTGGTGCAACCCTCCCCGCACCCACTTCGACCTTGCCATGCCCATGTTCCTCAAAATTGCCGAGTACCGCGCCGGCATTGTCCCCGTTTCTTACCGCCGAGTGCCATGTCGGAAGCAGGGGGGAATCAGGTTCACGATCAACGGCTTCCGTTACTTCAATTTGGTGCTAATCACCAACGTGGCAGGCGCAGGAGATATCGTGAGGGTGAGCGTGAAGGGATCGAGGACTGGGTGGATGAGCATGACCAGAAACTGGGGGCAAAACTGGCAATCCAATGCCGTATTGGTGGGCCAGGCTCTGTCCTTCAGGGTGACCGGCAGTGACCGACGAACCTCCACGTCATGGAACATCGTTCCCGCCCATTGGCAGTTCGGCCAGACTTTCACCGGCAAGAACTTTCGGGTCTAA 777 57.53 MASIKFLYIASVLSVFLAVEARIPGVYSGSPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGQSCGACFEIKCANDPRWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSRTGWMSMTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6077979 6079602 + MC02g0766 Mch2g0893 681815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0893 258 Gene3D - 20 160 IPR036908 -
Mch2g0893 258 CDD DPBB_EXPA_N 31 159 - -
Mch2g0893 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Mch2g0893 258 FunFam Expansin 164 256 - -
Mch2g0893 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Mch2g0893 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Mch2g0893 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Mch2g0893 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Mch2g0893 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Mch2g0893 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Mch2g0893 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Mch2g0893 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Mch2g0893 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Mch2g0893 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Mch2g0893 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Mch2g0893 258 Gene3D - 164 256 IPR036749 -
Mch2g0893 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Mch2g0893 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Mch2g0893 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Mch2g0893 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Mch2g0893 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Mch2g0893 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Mch2g0893 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Mch2g0893 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Mch2g0893 258 SMART dpbb_1 67 154 IPR007112 -
Mch2g0893 258 FunFam Expansin 21 160 - -
Mch2g0893 258 PANTHER EXPANSIN-A15 17 256 IPR002963 GO:0009664(InterPro)
Mch2g0893 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0867 Mch-Chr1:12068414 Mch2g0893 Mch-Chr2:6077979 2.43E-99 dispersed
Mch2g0893 Mch-Chr2:6077979 Mch4g2162 Mch-Chr4:23468771 1.18E-160 dispersed
Mch4g1664 Mch-Chr4:19820837 Mch2g0893 Mch-Chr2:6077979 1.45E-92 transposed
Mch6g2561 Mch-Chr6:27464216 Mch2g0893 Mch-Chr2:6077979 7.83E-95 transposed
Mch4g0379 Mch-Chr4:2416874 Mch2g0893 Mch-Chr2:6077979 2.62E-93 transposed
Mch1g0714 Mch-Chr1:11069378 Mch2g0893 Mch-Chr2:6077979 2.29E-173 wgd
Mch2g0893 Mch-Chr2:6077979 Mch3g0241 Mch-Chr3:3356087 9.30E-173 wgd
Mch2g0893 Mch-Chr2:6077979 Mch9g1554 Mch-Chr9:17825037 5.00E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0893 - - - 0.0