Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0904 ATGGCAGAAGGGGAGGATATTCAGCCACTTGTCTGCGACAATGGAACAGGAATGGTTAAGGCTGGGTTTGCTGGAGATGATGCTCCTAGGGCTGTGTTTCCTAGTATAGTAGGTCGCCCACGGCATACTGGTGTGATGGTTGGCATGGGCCAAAAGGATGCGTACGTTGGGGATGAAGCTCAGTCCAAACGTGGTATTTTAACTTTGAAATATCCCATTGAGCATGGTATAGTCAGTAATTGGGATGACATGGAGAAAATCTGGCATCACACCTTCTACAATGAACTTCGAGTGGCTCCAGAAGAGCACCCTGTCCTTCTCACTGAAGCACCTCTTAACCCAAAGGCTAACCGTGAAAAAATGACCCAAATCATGTTCGAGACTTTCAATACTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCTCTCTATGCTAGTGGACGGACGACTGGTATTGTTTTGGATTCTGGAGATGGTGTGAGTCACACTGTCCCAATCTATGAGGGGTATGCTCTCCCCCATGCCATACTTCGTCTTGACCTTGCTGGGCGTGACCTCACTGATGCGCTTATGAAAATCCTGACGGAACGTGGGTACTCCTTCACCACCTCAGCTGAGCGTGAAATTGTGAGAGACATGAAGGAAAAGCTGGCATATATTGCTCTTGATTTTGAGCAAGAACTTGAAACTTCCAAAACTGGTTCTTCTGTTGAGAAGAGTTACGAGCTGCCTGATGGGCAAGTTATCACAATTGGTGCAGAACGTTTTCGCTGTCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATCCACGAAACAACGTATAACTCCATCATGAAATGTGATGTCGACATCAGGAAGGATTTGTATGGAAACATTGTTCTTAGTGGTGGATCAACCATGTTCCCAGGCATTGCTGACCGAATGAGCAAAGAAATAACTGCGTTGGCTCCCAGCAGCATGAAAATAAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTGGCATCACTCAGCACGTTTCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCTGGTCCATCCATTGTGCACAGGAAATGCTTCTGA 1134 46.56 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDFEQELETSKTGSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6143104 6146552 - MC02g0774 Mch2g0904 681826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0904 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Mch2g0904 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Mch2g0904 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Mch2g0904 377 PRINTS Actin signature 51 62 IPR004000 -
Mch2g0904 377 PRINTS Actin signature 238 254 IPR004000 -
Mch2g0904 377 PRINTS Actin signature 63 85 IPR004000 -
Mch2g0904 377 PRINTS Actin signature 142 161 IPR004000 -
Mch2g0904 377 PRINTS Actin signature 28 37 IPR004000 -
Mch2g0904 377 PRINTS Actin signature 117 130 IPR004000 -
Mch2g0904 377 FunFam Putative actin-related protein 5 341 369 - -
Mch2g0904 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Mch2g0904 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Mch2g0904 377 Gene3D - 10 371 - -
Mch2g0904 377 Pfam Actin 5 377 IPR004000 -
Mch2g0904 377 FunFam Major actin 259 340 - -
Mch2g0904 377 SMART actin_3 7 377 IPR004000 -
Mch2g0904 377 FunFam Actin, muscle 182 273 - -
Mch2g0904 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Mch2g0904 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Mch2g0904 377 Gene3D - 140 340 - -
Mch2g0904 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Mch2g0904 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0904 Mch-Chr2:6143104 Mch9g1563 Mch-Chr9:17932457 2.49E-273 dispersed
Mch5g1440 Mch-Chr5:15488245 Mch2g0904 Mch-Chr2:6143104 1.06E-274 transposed
Mch6g0364 Mch-Chr6:2420660 Mch2g0904 Mch-Chr2:6143104 3.35E-85 transposed
Mch9g2320 Mch-Chr9:23324132 Mch2g0904 Mch-Chr2:6143104 7.06E-69 transposed
Mch1g1037 Mch-Chr1:13374934 Mch2g0904 Mch-Chr2:6143104 2.46E-150 transposed
Mch1g1038 Mch-Chr1:13375724 Mch2g0904 Mch-Chr2:6143104 1.09E-70 transposed
Mch9g0563 Mch-Chr9:4112201 Mch2g0904 Mch-Chr2:6143104 1.29E-62 transposed
Mch1g0721 Mch-Chr1:11115765 Mch2g0904 Mch-Chr2:6143104 2.23E-276 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0904 K10355 - mdm:103424317 750.74