Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0908 ATGGAGGAGGCGAATAATGGCTGCTCCGTTCGGAGTTTGATCGGCTTGGTGAACGATGTAGCTTCAATCTCAGATTACAGATATGCGGTCAGAAGGCAGTATTGTAATTTAGCTAGGCGGCTGAAGCTGTTGATCCCAATGTTCGAGGAGATGAGGGATATGAAGAAGCAGGCGCTGGCGGATGCTACCGTCACAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAGTCGACCAAGGAGTTGCTTAGACTGGGGAGCGAGGGGAGCAAGATTTATCTGGCCCTGGATAGAGAGCAAACTTTGAATAAGTTTCACGAGGTGACATCAAGACTAGAGCAAGCCCTGAATGAAATTTCATATGATGATCTAGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCAAAAGGAAGGATAGATACACAAGATGCTGAACTGTATACTAATCTCCACTCTCTCTATAACAACAGCAAAGATTCTGCTACTGATCCTTCTGTCTTGAAGGAATTGGCTGAAAAGTTGCAGCTAATGGATATAGCTGATCTTACTCAAGAGTCTCTTGCTTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAACACTGTTGAAGAAAATAAAAGATTTTGTGCTAACTGAAAACCCTGAAATTGGTGCTCCTTCAAAACAACAAAGTCATACTCGCACTGGTGGACAAGCAACTGCTGAGAAGAAAGATATAACGTCCCTTCTCATACCTGAAGACTTTCGGTGCCCCATATCCCTAGAGTTGATGATAGATCCCGTCATTGTCTCCACAGGACAGACCTATGAACGTTCTTACATTGAGAAGTGGCTGGAAGCAGGGCAATCAACATGCCCTAAAACTCAACAAGTCCTCACCAGCAAAATTATTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGCCAATGGGGTTGAACCACCAAAACGAACCAGCAGTTCTCAGCCCAATGAACTCTTGTCTCCTTCCGAACGCTGTAGGTATGAAACTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAAGCGATCGGCTGCTGGTGAGATCCGCCTCCTTGCGAAACGCAATGCAAATAATCGCGTGGCCATTGCTGAAGCTGGTGCAATTCCTCACCTTGTCGGCCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGTTGTGACAGCATTGCTCAACCTTTCAATTTGTGACAATAATAAGAGAAGTATCATGTCCTGTAGGGCAGTGCCTGGCATAGTCCATGTGCTGAAGTTGGGGAGTATGGAAGCACGTGAAAATGCTGCAGCAACCCTTTTCAGCCTCTCTGTCGTGGACGAATATAAAGTAACGATTGGCGCGTCGGGAGCCATTCCACCACTCATCACACTGCTCAGTGAAGGTACTCAAAGGGGGAAGAAGGACGCCGCAACCGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGGTAAAGGCAGTAAGAGGTGGTGTGGTTTCCATACTGATGCAGCTGCTGACAGAATCTAGAATAGGCATGGTAGATGAGGCCCTGGCAATTCTAGCCATACTGGCCAGCAATTCCGAAGCGCGGGCTGCCATCGGAGCTGCTGAAGCTGTCCCCGTTTTAATCAATTTCATCGCTGCTGCATCCCCTAGGAACAGAGAGAATGCAGCTGCAGTTCTGGTTCATCTCTGCGCGGCAGACAAGCGACATCTCGTGGAGGCAACCGAGCTTGGAGTGATTAATTTGCTTATAGATTTGGCAGAAAATGGGACAGACAGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTCATGGAGCGGCAGAAAGAGGCTGAGGCTCAATCTCAGACCCAACTATTGCTGCCTCCGCCTTCTGCAATCGGCAACGTTGAAAGTTGA 1980 46.77 MEEANNGCSVRSLIGLVNDVASISDYRYAVRRQYCNLARRLKLLIPMFEEMRDMKKQALADATVTALASLKEALESTKELLRLGSEGSKIYLALDREQTLNKFHEVTSRLEQALNEISYDDLDISDEVKEQVELVLSQFKRAKGRIDTQDAELYTNLHSLYNNSKDSATDPSVLKELAEKLQLMDIADLTQESLALHEMVSASDGDPGGRFEKMSTLLKKIKDFVLTENPEIGAPSKQQSHTRTGGQATAEKKDITSLLIPEDFRCPISLELMIDPVIVSTGQTYERSYIEKWLEAGQSTCPKTQQVLTSKIITPNYVLRSLIAQWCEANGVEPPKRTSSSQPNELLSPSERCRYETLLHKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPHLVGLLSTTDPLTQEHVVTALLNLSICDNNKRSIMSCRAVPGIVHVLKLGSMEARENAAATLFSLSVVDEYKVTIGASGAIPPLITLLSEGTQRGKKDAATALFNLCFFQGNKVKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEARAAIGAAEAVPVLINFIAAASPRNRENAAAVLVHLCAADKRHLVEATELGVINLLIDLAENGTDRGKRKATQLLDQINRFMERQKEAEAQSQTQLLLPPPSAIGNVES 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6172638 6177049 + MC02g0778 Mch2g0908 681830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0908 659 Coils Coil 621 641 - -
Mch2g0908 659 SMART arm_5 466 506 IPR000225 GO:0005515(InterPro)
Mch2g0908 659 SMART arm_5 548 588 IPR000225 GO:0005515(InterPro)
Mch2g0908 659 SMART arm_5 425 465 IPR000225 GO:0005515(InterPro)
Mch2g0908 659 SMART arm_5 384 424 IPR000225 GO:0005515(InterPro)
Mch2g0908 659 SMART arm_5 507 547 IPR000225 GO:0005515(InterPro)
Mch2g0908 659 Gene3D - 344 649 IPR011989 -
Mch2g0908 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 339 IPR013083 -
Mch2g0908 659 FunFam RING-type E3 ubiquitin transferase 259 333 - -
Mch2g0908 659 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch2g0908 659 FunFam RING-type E3 ubiquitin transferase 6 120 - -
Mch2g0908 659 SUPERFAMILY ARM repeat 356 628 IPR016024 -
Mch2g0908 659 PANTHER U BOX DOMAIN-CONTAINING 30 628 - -
Mch2g0908 659 MobiDBLite consensus disorder prediction 232 250 - -
Mch2g0908 659 FunFam RING-type E3 ubiquitin transferase 339 635 - -
Mch2g0908 659 SMART Ubox_2 263 326 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch2g0908 659 Gene3D - 8 120 IPR036537 GO:0007166(InterPro)
Mch2g0908 659 CDD RING-Ubox_PUB 261 311 IPR045210 -
Mch2g0908 659 CDD MLKL_NTD 31 140 - -
Mch2g0908 659 Coils Coil 96 116 - -
Mch2g0908 659 Pfam Mixed lineage kinase domain-like N-terminal domain 30 119 IPR054000 -
Mch2g0908 659 Pfam U-box domain 260 330 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch2g0908 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 395 433 IPR000225 GO:0005515(InterPro)
Mch2g0908 659 MobiDBLite consensus disorder prediction 639 659 - -
Mch2g0908 659 MobiDBLite consensus disorder prediction 231 250 - -
Mch2g0908 659 Pfam Armadillo/beta-catenin-like repeat 468 505 IPR000225 GO:0005515(InterPro)
Mch2g0908 659 Pfam Armadillo/beta-catenin-like repeat 384 423 IPR000225 GO:0005515(InterPro)
Mch2g0908 659 SUPERFAMILY RING/U-box 257 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1252 Mch-Chr1:14799183 Mch2g0908 Mch-Chr2:6172638 6.05E-15 dispersed
Mch1g1703 Mch-Chr1:17701813 Mch2g0908 Mch-Chr2:6172638 1.78E-14 dispersed
Mch2g0908 Mch-Chr2:6172638 Mch3g0294 Mch-Chr3:4172226 2.09E-192 dispersed
Mch2g0908 Mch-Chr2:6172638 Mch3g1460 Mch-Chr3:16894727 1.15E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0908 K27628 - csv:101221150 1038.87