Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0909 ATGGCTCACTCTTCTCTTCCAATCTTTTTAGATCCCCCAAATTGGCAGCAGCAATCGAATCAGGCACCGGAAGCAAATGATCATGAAGACCCACGTCAGATTCCGGCGTTTCTGCCAGCGCCGGCGGTTCATGGCGCCGGCGCGGGGTCTATCCGGCCGGGTTCTATGGCGTACAGAGCGCGGCTGGCGATGATTCCGCAGCCGGAGGCGGCGCTGAAATGCCCGCGCTGTGATTCCACAAACACCAAATTTTGCTACTTCAATAACTACAGCCTTTCTCAGCCGCGGCACTTCTGTAAAACCTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTGAGAAACGTCCCCGTCGGAGGAGGCTTCCGGAAGAACAAGAAGAAGAAGAAAAGTAGTAACCGATCCAAGTCCCCCACTGCCACTCAAGCTCAAATGGGTAATTCGAGAGGAAGTGGTGGCGCAATAATCTCAAACATAGAGAACCCCACAATGGGCCATTTCCCTCGATTCGGAGGGGGAAACTCAGGCCTCAACTTCACCGGAATTCATCTCAATTCCGGCCGCCAAGATCATCATCAATTGGATCATCATCAATGGCGTCCACAGCAACATCCGCCGTTCATCGTCGCCGGACTCGAACCTCCGCCGCCACCCGGATACCCATTAAACATTATTCAAACCCAAGTTAACAACTTTGGCGCCGGCCCTAACTCATCACCATCATCAGCATCAGCAGCAGCTCTACAATACTGTCACCAACAACTTCAGAATCTGACACCCTTTCCGAGGATTCCCATGAAAAACGAGGAACAAATCCAAAGCCAAAGCCAAAACCAAGAACAAGGAATAATAATGTCTAATTTCTTACGACCAGATCATGATCACCAGAACAACCACCAATTGATGTGGCCGTGTGATCATCAAAATTCCTGGACAGATCATCATTTGTCGGCTCTCAGCTCTTCTTCCAGCACCCATCTCTTGTAA 984 51.52 MAHSSLPIFLDPPNWQQQSNQAPEANDHEDPRQIPAFLPAPAVHGAGAGSIRPGSMAYRARLAMIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRKNKKKKKSSNRSKSPTATQAQMGNSRGSGGAIISNIENPTMGHFPRFGGGNSGLNFTGIHLNSGRQDHHQLDHHQWRPQQHPPFIVAGLEPPPPPGYPLNIIQTQVNNFGAGPNSSPSSASAAALQYCHQQLQNLTPFPRIPMKNEEQIQSQSQNQEQGIIMSNFLRPDHDHQNNHQLMWPCDHQNSWTDHHLSALSSSSSTHLL 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6180463 6184345 - MC02g0779 Mch2g0909 681831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0909 327 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 66 266 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0909 327 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch2g0909 327 MobiDBLite consensus disorder prediction 113 157 - -
Mch2g0909 327 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch2g0909 327 MobiDBLite consensus disorder prediction 134 157 - -
Mch2g0909 327 MobiDBLite consensus disorder prediction 10 24 - -
Mch2g0909 327 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch2g0909 327 MobiDBLite consensus disorder prediction 10 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0909 Mch-Chr2:6180463 Mch4g2138 Mch-Chr4:23362067 1.37E-48 dispersed
Mch1g0729 Mch-Chr1:11160266 Mch2g0909 Mch-Chr2:6180463 9.24E-43 wgd
Mch2g0909 Mch-Chr2:6180463 Mch5g1836 Mch-Chr5:18631446 2.22E-46 wgd
Mch2g0909 Mch-Chr2:6180463 Mch9g1562 Mch-Chr9:17923634 4.52E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42922 PF02701 zf-Dof 7.70E-33 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0909 - - - 0.0