Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0963 ATGGAGCCGTTGGATAAAGCTCAGCCCAAATCCTCCCCTCTCGCGCCATTTCCTAGGGATTCTCGGGGCTCGCTCGAGGTTTTCAATCCCTCCTCCACGTACTCCTCCCGCTCCATCAATTCGATTCCGCGGCCGAATCCTGCGTGGCCCAATTGGGTGGAGCCTGCGCGTACCAGCTCCGAATCGGACTCGTCCCGCCTCGCAGCCAAACCGGCCGCCGGAAAAACCGCCGACGAGATTACATCATGGATGGCCTTCAAGGACGCCAACCCTTCCCAGCCGTCGTCGCCGCTCGCTCAGAAGACTATCTCCGCGATTCTCAGCGAAAAATCTCCGGCCGTGAGGGCGCAATCGCCGGACGAAGTCGGTTCCGCCGCCCAACGCGCCGCCGAGTGGGGACTGGTGCTGAAAACCGACACGGAGACTGGGAAGCCTCAGGGCGTCGGAGTTCGAACTTCCGGAGGCGATGAACCTAACGCCAAACAGGAGAATTCGAGAAGAACTTCGAATAACTCGGTGCGGAGTTCGGGCGACATGTCGGACGACGGGGCGCGAGAGCGGGGGATTCCGAGAGTGTCCGAGGACTTGAAGGACGCTCTGTCGACATTTCAGCAAACATTTGTGGTTTCGGATGCAACGAAACCGGATTATCCGATTATGTATGCTAGTGCCGGATTCTTCAAGATGACGGGCTATACATCCAAGGAGGTTATTGGAAGAAATTGTCGGTTTTTACAGGGTGCAGATACAGACCCAGAAGACGTGGCCAAGATCCGAGAGGCTTTACAGGCGGGGACGAGTTACTGTGGGAGGTTGTTGAATTATAAGAAAGATGGGACCCCGTATTGGAACCTACTTACTATTTCACCTATCAAAGATGATGACGGGAAAGTTCTCAAGTTTATTGGAATGCAAGTGGAGGTGAGCAAACACACAGAGGGCTTCAAAGATAAGATGGTCCGTCCCAATGGCTTGCCAGAATCCTTGATTCGTTATGATGCCCGGCAAAAAGAGATGGCTACCAGTTCAGTAACGGAACTCGTGCAGGCGGTGAAAAGGCCTCGGTCTCTAAGCGAATCCAGGCCTCGAGCTCTAAGTGAATCTATGAGCCGCCGGTTAGTTAGAAAATCCGGCGGCGACGACCTTAGAGTTGAAGCTGCTGCCATGGTTAGGCGAAAGTCAGAGAGCGCCGCAGCTCCGACTGGACGAAACTCACATGGGAGAAGTAGAAGGTCGATGCAGCGTATAAGTGAGCTGCCGGAGAAGAAACCCAAGAAATTCGGCCGTCGTTCATTTATGGGGATTAAGAGGAAAAGTCGGTCAAATGTTGAAAGCTTTGACATTGACATTGAAGATGGCTCAGACGACGATGATGAGACAGATGACGATGAGAGGCCAGATAGCGTTGATGACAAAGTAAGGCAGAGAGAAATGAGGAAGGGTATTGATTTAGCTACTACCCTCGAACGTATAGAGAAAAACTTTGTCATTACTGATCCCCGATTGCCTGACAATCCCATTATATTTGCTTCTGATAGCTTCCTGGAACTAACCGAGTATAGTAGAGAAGAAATCTTGGGAAGAAATTGCAGGCAGTTTCTGCAAGGACCTGAAACCGATCGAGCCACCGTAAGGAAAATAAGAGATGCAATCGACAACCAAACGGAAGTTACAGTGCAACTTATTAACTACACGAAAACTGGTAAGAAGTTTTGGAACCTGTTTCATCTACAGCCTATGCGTGATCAGAAGGGAGAAGTCCAGTATTTTATTGGAGTACAACTCGATGGCAGTCAGCATGTGGAACCGCTAAGCAATTGCATACCGCAAGATACTGCAGAAGAGGGTGTAAAATTGATAAAAGAAACTGCAGAAAATGTTGATTTGGCGGCTAGAGAACTTCCCGACGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCCAAGGTGGTCCAACCAAAGCCTCACAGAAAGGATAGTCCTTCTTGGAAGGCTATCCAGAAGATTTTGGACAGCGGAGAACCAATAGGACTGAAACATTTCAGGCCAGTTAAACCTTTGGGATCAGGTGATACTGGCAGCGTGCATTTGGTTGAACTGTGCGGGACAGATCAGTATTTTGCAATGAAGGCAATGGATAAGGGTGTTATGCTTAACCGCAACAAGGTGCATAGAGCTTGCGCGGAGAGAGAAATACTTGACATGTTGGATCATCCTTTTCTTCCTGCATTATATGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGGGAACTCTTTCTGCTTTTGGACAGACAACCTACAAAGGTCATAAAAGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTGTCGTGGCATTAGAGTATCTTCATTGTCAAGGGATAATTTACCGGGATTTGAAGCCCGAAAATGTTCTACTACAGAGCAATGGACATGTTGCCTTGACAGATTTTGACTTGTCATGTTTGACTTCTTGCAAACCTCAGCTTTTGCTTCCAACCACAAATGAGAAGAAAAAGCAATCAAAATCTCAACAGGCTCCAATCTTTATGGCTGAACCCATGCGAGCATCCAACTCATTCGTTGGTACTGAAGAGTACATAGCACCGGAAATCATAACTGGGGCAGGCCATACTAGTGCTGTGGACTGGTGGGCTTTGGGCATCCTTATCTATGAGATGCTCTATGGATACACTCCCTTTAGGGGGAAGACAAGGCAAAAAACTTTCGCCAACATTCTTCATAAGGATCTTAAATTCCCAAAGAGTATATCGGCTAGTCTTAGTACGAAGCAGTTAATTTTCAGGTTGTTGCATAGAGACCCCAAAAACCGATTGGGTTCTCAAGAAGGAGCAAACGAAATCAAACAACATCCTTTCTTCCGAGGAGTCAATTGGGCGCTCGTTCGTTGCATGAGTCCGCCCGAGCTTGCAGCTCCTCTTTTCGAGACAACAGATGCTGAAAAAGATGCTATTAAAAGTAAAACTTCAGATTTTGATCTAAAAGATCTTGAACTCAGTGTTTTCTGA 3054 47.71 MEPLDKAQPKSSPLAPFPRDSRGSLEVFNPSSTYSSRSINSIPRPNPAWPNWVEPARTSSESDSSRLAAKPAAGKTADEITSWMAFKDANPSQPSSPLAQKTISAILSEKSPAVRAQSPDEVGSAAQRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNAKQENSRRTSNNSVRSSGDMSDDGARERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPYWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSLSESRPRALSESMSRRLVRKSGGDDLRVEAAAMVRRKSESAAAPTGRNSHGRSRRSMQRISELPEKKPKKFGRRSFMGIKRKSRSNVESFDIDIEDGSDDDDETDDDERPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRQFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPQDTAEEGVKLIKETAENVDLAARELPDANLTPEDLWANHSKVVQPKPHRKDSPSWKAIQKILDSGEPIGLKHFRPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSNGHVALTDFDLSCLTSCKPQLLLPTTNEKKKQSKSQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSISASLSTKQLIFRLLHRDPKNRLGSQEGANEIKQHPFFRGVNWALVRCMSPPELAAPLFETTDAEKDAIKSKTSDFDLKDLELSVF 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6476122 6486631 - MC02g0818 Mch2g0963 681885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0963 1017 FunFam Putative LOV domain-containing protein 766 981 - -
Mch2g0963 1017 SUPERFAMILY PYP-like sensor domain (PAS domain) 213 305 IPR035965 -
Mch2g0963 1017 ProSiteProfiles PAC domain profile. 555 609 IPR000700 -
Mch2g0963 1017 MobiDBLite consensus disorder prediction 356 390 - -
Mch2g0963 1017 PANTHER FLIPPASE KINASE 1-RELATED 636 992 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch2g0963 1017 MobiDBLite consensus disorder prediction 351 474 - -
Mch2g0963 1017 Gene3D PAS domain 468 634 - -
Mch2g0963 1017 MobiDBLite consensus disorder prediction 164 178 - -
Mch2g0963 1017 Pfam Protein kinase domain 685 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0963 1017 SUPERFAMILY PYP-like sensor domain (PAS domain) 496 596 IPR035965 -
Mch2g0963 1017 FunFam LOV domain-containing protein 681 765 - -
Mch2g0963 1017 FunFam LOV domain-containing protein 469 634 - -
Mch2g0963 1017 ProSiteProfiles PAS repeat profile. 484 554 IPR000014 -
Mch2g0963 1017 SMART pac_2 558 600 IPR001610 -
Mch2g0963 1017 SMART pac_2 269 311 IPR001610 -
Mch2g0963 1017 CDD STKc_phototropin_like 680 988 - -
Mch2g0963 1017 ProSiteProfiles Protein kinase domain profile. 682 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0963 1017 Gene3D Transferase(Phosphotransferase) domain 1 766 979 - -
Mch2g0963 1017 MobiDBLite consensus disorder prediction 448 466 - -
Mch2g0963 1017 Gene3D Phosphorylase Kinase; domain 1 681 765 - -
Mch2g0963 1017 ProSiteProfiles PAC domain profile. 266 320 IPR000700 -
Mch2g0963 1017 SUPERFAMILY Protein kinase-like (PK-like) 660 990 IPR011009 -
Mch2g0963 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch2g0963 1017 ProSiteProfiles PAS repeat profile. 192 263 IPR000014 -
Mch2g0963 1017 Pfam PAS domain 213 309 IPR000014 -
Mch2g0963 1017 Pfam PAS domain 503 596 IPR000014 -
Mch2g0963 1017 FunFam Putative LOV domain-containing protein 206 362 - -
Mch2g0963 1017 SMART pas_2 482 552 IPR000014 -
Mch2g0963 1017 SMART pas_2 194 263 IPR000014 -
Mch2g0963 1017 Gene3D PAS domain 206 369 - -
Mch2g0963 1017 MobiDBLite consensus disorder prediction 411 428 - -
Mch2g0963 1017 CDD PAS 219 308 IPR000014 -
Mch2g0963 1017 CDD PAS 495 596 IPR000014 -
Mch2g0963 1017 NCBIfam PAS domain S-box protein 505 596 IPR000014 -
Mch2g0963 1017 NCBIfam PAS domain S-box protein 219 311 IPR000014 -
Mch2g0963 1017 MobiDBLite consensus disorder prediction 25 45 - -
Mch2g0963 1017 SMART serkin_6 682 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch2g0963 1017 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524(InterPro)
Mch2g0963 1017 MobiDBLite consensus disorder prediction 1 77 - -
Mch2g0963 1017 MobiDBLite consensus disorder prediction 135 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0963 Mch-Chr2:6476122 Mch4g0368 Mch-Chr4:2323977 9.39E-288 dispersed
Mch2g0963 Mch-Chr2:6476122 Mch2g0443 Mch-Chr2:3222422 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77218 PF00069 Pkinase 6.30E-63 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0963 K20715 - csv:101214662 1772.67