Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0969 ATGTTTGATCTTAATCTCAATGTCGACTCGCCCGATGCGACTCAGAATGGCGATTCTGTCATGTTCTTTGAGAAACTTCCTCAAGGCTCGGGGAACCAAATGGATGAATATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGGGGCGATGACGACTCGTGCTCCACACGCGCCGCTGGCGAGCTTTTCACGTTCAACTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTCGTCACAAAGGAGTTTTTCCCGATAGGTGGAACAGTGAATGCTGACTTCGGGAGTCTTCAGGGGCAAAATTCTGCCTCTTCTTCGTCATCTTCATCGAGGAAGAACTGGATCAACCTTGCATTTGATCGAAGCGGGTCAGGAGGGGAGGGGAGGATTGTTCAGCCAGTTCAGCCTCAGCAGGTGAAGAAGAGCAGGAGGGGACCAAGGTCTCGGAGCTCGCAGTACCGAGGCGTCACATTCTACAGGAGGACTGGGCGGTGGGAATCTCATATTTGGGACTGCGGAAAGCAAGTCTATCTTGGTGGATTCGACACTGCACATTCGGCAGCAAGAGCATATGATCGAGCCGCTATCAAGTTCAGAGGGGTCGACGCTGATATTAATTTCAATCTTAGTGATTATGAGGAAGATCTGAAACAGATGAAGAATTTGAGCAAGGAAGAGTTTGTTCACATACTTCGTCGTCAGAGCACTGGTTTCTCAAGGGGGAGCTCAAAATATAGAGGGGTGACACTCCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTACGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTAACCAACTTTGAGCCAAGCACGTATGAAGGAGAGAGGGTTTCTGAGGGCAGCAGTGAAGGTGGTCGGAACATGCTTGATTTGAATTTGGGGATTTCACCCCCCTCACTTGAAAATTGTCAAAAAGATAATGAGGGGCATCTGCGGTTCCAGTCTGGTCCTTATTATGCTAATGACAGGAGCACAATGATGGAGAGCAATGCTGATGCAGCAGTTGGCGATCCACCTTTCAAAGGATTGGTAATGACATCAGAGCATGCTCCCTTATGGAATGGTTTACAATCTAGCTTCTTTCCCAATGAGGAAAGCGTGACAGAGAAGAGACTTGCATTAGGTTCATCGCAAGGAGTCCCCGACTGGCCATGGCAAATTCATGGCCAGGTTAATGCCACCCAAGTGCCCTTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATCTCCCGGCTGCCATCCATCCCCCGCGCCAACCGGGATTGACCGCCCATAATCTCCATTTCACTCCTGCCAAAGCTTCCCTCAACTCCTCTCAATATCGCCACCAGTTTAACCCACAACAGGCACCACCATAA 1491 49.5 MFDLNLNVDSPDATQNGDSVMFFEKLPQGSGNQMDEYESGTSNSSIVNADTSSNGGDDDSCSTRAAGELFTFNFEILKAGSANDVVTKEFFPIGGTVNADFGSLQGQNSASSSSSSSRKNWINLAFDRSGSGGEGRIVQPVQPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEEDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGERVSEGSSEGGRNMLDLNLGISPPSLENCQKDNEGHLRFQSGPYYANDRSTMMESNADAAVGDPPFKGLVMTSEHAPLWNGLQSSFFPNEESVTEKRLALGSSQGVPDWPWQIHGQVNATQVPLFSAAASSGFSFSATHLPAAIHPPRQPGLTAHNLHFTPAKASLNSSQYRHQFNPQQAPP 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6542028 6546162 - MC02g0824 Mch2g0969 681891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0969 496 CDD AP2 250 310 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0969 496 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677(InterPro)
Mch2g0969 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 341 - -
Mch2g0969 496 ProSiteProfiles AP2/ERF domain profile. 159 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0969 496 ProSiteProfiles AP2/ERF domain profile. 251 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0969 496 SMART rav1_2 159 221 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0969 496 SMART rav1_2 251 314 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0969 496 FunFam AP2-like ethylene-responsive transcription factor 250 310 - -
Mch2g0969 496 Gene3D AP2/ERF domain 158 216 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0969 496 Gene3D AP2/ERF domain 250 309 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0969 496 SUPERFAMILY DNA-binding domain 250 309 IPR016177 GO:0003677(InterPro)
Mch2g0969 496 MobiDBLite consensus disorder prediction 26 60 - -
Mch2g0969 496 CDD AP2 159 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0969 496 MobiDBLite consensus disorder prediction 131 160 - -
Mch2g0969 496 MobiDBLite consensus disorder prediction 32 60 - -
Mch2g0969 496 Pfam AP2 domain 250 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0969 496 Pfam AP2 domain 159 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0969 496 FunFam AP2-like ethylene-responsive transcription factor 158 217 - -
Mch2g0969 496 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g0969 496 PRINTS Ethylene responsive element binding protein signature 290 310 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0969 Mch-Chr2:6542028 Mch9g1629 Mch-Chr9:18450309 7.24E-90 dispersed
Mch1g1224 Mch-Chr1:14575967 Mch2g0969 Mch-Chr2:6542028 3.67E-108 transposed
Mch2g1314 Mch-Chr2:9321250 Mch2g0969 Mch-Chr2:6542028 9.20E-105 transposed
Mch1g0783 Mch-Chr1:11506599 Mch2g0969 Mch-Chr2:6542028 8.20E-119 wgd
Mch2g0969 Mch-Chr2:6542028 Mch5g1789 Mch-Chr5:18324343 1.61E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42927 PF00847 AP2 3.10E-09 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0969 K09284 - csv:101222024 835.484