Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g0984 ATGGGTTCTAAGGATGTGGTGATGGAAGAGGAGAGGAGGCAGCAGGGGAAGGACTATGTGGACCCGCCACCAGCTCCGCTGCTGGGCTTCTCCGAGCTCAAGCTTTGGTCCTTTCACAGAGCTGTCATTGCTGAGTTCATGGCTACTCTCCTTTTCCTCTACATCACCCTCGCCACCGTCATCGGAAACAATGCCCGTCCCGGGCCCTGCACCGGCGTCGGCCCTCTCGGTATAGCCTGGGCCTTCGGCGTCATGATCTTCGTTCTTGTTTACTGCACCGCTGGTATTTCAGGTGGGCATATAAATCCAGCCGTGACGTTTGGGCTGTTGTTGGCGAGAAAGGTGTCTGTGGTCCGAGCGGTAGCTTATATGGCGGCGCAGTGTCTCGGAGCCATTGTCGGCGTTGCCTTGGTAAAATCTTTCATGAAGCATGCTTACAACAGCCATGGTGGCGGAGCTAACCTCGTCGCCGACGGTTTCAGCCGAGGCACCGCCCTCGGAGCCGAGATTATCGGCACTTTTCTGCTGGTCTACACCGTGTTCTCCGCCACTGATCCCAAGAGAAACGCTCGTGACTCGCATGTTCCTGTTTTGGCTCCATTACCCATCGGATTCGCCGTGTTCGTAGTTCACCTAGCCACCATTCCGATAACAGGCACCGGCATAAACCCAGCTCGGAGCTTAGGTGCTGCAGTCATGTACAACAACGGAAGAGCTTGGAGAGACCATTGGATATTCTGGGTTGGGCCCTTTCTCGGGGCGGCAGCAGCAGCGTTGTATCATCAATACGTTCTCAGAGCGGCAGGAGTGAAAGCACTCGGATCCTTCCGCAGCAACCGCTCTGTCTGA 849 56.07 MGSKDVVMEEERRQQGKDYVDPPPAPLLGFSELKLWSFHRAVIAEFMATLLFLYITLATVIGNNARPGPCTGVGPLGIAWAFGVMIFVLVYCTAGISGGHINPAVTFGLLLARKVSVVRAVAYMAAQCLGAIVGVALVKSFMKHAYNSHGGGANLVADGFSRGTALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFVVHLATIPITGTGINPARSLGAAVMYNNGRAWRDHWIFWVGPFLGAAAAALYHQYVLRAAGVKALGSFRSNRSV 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6647741 6651039 - MC02g0839 Mch2g0984 681906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g0984 282 ProSitePatterns MIP family signature. 100 108 IPR022357 -
Mch2g0984 282 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0984 282 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0984 282 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0984 282 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0984 282 PRINTS Major intrinsic protein family signature 204 226 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0984 282 PRINTS Major intrinsic protein family signature 244 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0984 282 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 278 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Mch2g0984 282 SUPERFAMILY Aquaporin-like 32 266 IPR023271 -
Mch2g0984 282 Pfam Major intrinsic protein 32 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0984 282 Gene3D Glycerol uptake facilitator protein. 25 282 IPR023271 -
Mch2g0984 282 FunFam Probable aquaporin PIP1-2 25 280 - -
Mch2g0984 282 NCBIfam MIP family channel protein 44 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch2g0984 282 CDD MIP 40 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0984 Mch-Chr2:6647741 Mch9g1784 Mch-Chr9:19720111 1.02E-143 dispersed
Mch1g0798 Mch-Chr1:11604393 Mch2g0984 Mch-Chr2:6647741 4.97E-131 wgd
Mch2g0984 Mch-Chr2:6647741 Mch4g0481 Mch-Chr4:3094758 7.63E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g0984 K09872 - mdm:103444918 456.447