Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1024 ATGGATCAACTGATACGATGCGACGCTTTCATTCAAAATCCAGCCGCATCCTCCATTGTTGTACCACGCACTGAGCTTTCAGGACGCCCAGAATCAGATCGTTCTCAACCCAGTTCCAGGTCTGGGGGGGAGTTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCTGACAGAGAGAAACTAAGAAGGGACCGACTAAATGAACAGTTTTTCGAGCTGGGAAATATTTTAGATCCTGGTAGGCCCAAAAATGACAAAGCAACCATTTTAGTGGATACAATTCAATTGCTAAAGGATCTGACATCTGAAGTTAACAAATTGAAAACTGAGAATGCTACATTAACCGAAGAATCACGTGAGCTAGCTCAGGAAAAGAATGATCTTAGAGAAGAGAAGGCATCGCTCAAATCTGATATTGAGAATCTTAATGCTCAATATCAGCAGAGACTCAGGGCTACATACCCTTGGCCTGCCATGGATCACTCGGTCGTCATAGCCCCTCCCCCCTTTCCATTTCCAGTGCCAATGCAAATGCCTCCTGGGCCATTTCCTGTGCATCCATCCTTGCAGCCTTATCCATTCATCGGAAATCATAATCCGGGGGTAATTGCAAATCCTTGTTCCACCTTTGTCCCGTACATAACTCCTAACTCTGTAATTGAGCAGCAGTCCTCCCGAAATACACCGCCTTTTGTTCATCCAGGTAACCAGTCTCGTAACTTGAGCAAGCAAGATTCCGGTAGTAAATCCTCAAGTGAAAGCAAGATTGAGAAAAGTGTAGATTCTAGTGAAGTTGCAACGGACCTGGAGTTGAAGACTCCTGGATCCTCCACAGAACAGGATACATCATTTGAACAAACAAACAGTAAGAAAATGCGCAGGAAGGAAAATAATAAATCTGAAGAGAGTTTTTCAAGTAGATGTTCTTCATCTTGTAGTCTAGAGGTCAATTCGTCTAGTAGCACGGCTAATGGTAAATAA 984 43.7 MDQLIRCDAFIQNPAASSIVVPRTELSGRPESDRSQPSSRSGGEFKDSAAARKVQKADREKLRRDRLNEQFFELGNILDPGRPKNDKATILVDTIQLLKDLTSEVNKLKTENATLTEESRELAQEKNDLREEKASLKSDIENLNAQYQQRLRATYPWPAMDHSVVIAPPPFPFPVPMQMPPGPFPVHPSLQPYPFIGNHNPGVIANPCSTFVPYITPNSVIEQQSSRNTPPFVHPGNQSRNLSKQDSGSKSSSESKIEKSVDSSEVATDLELKTPGSSTEQDTSFEQTNSKKMRRKENNKSEESFSSRCSSSCSLEVNSSSSTANGK 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6942554 6946951 + MC02g0876 Mch2g1024 681946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1024 327 CDD bHLH_AtILR3_like 56 130 - -
Mch2g1024 327 Coils Coil 50 70 - -
Mch2g1024 327 MobiDBLite consensus disorder prediction 304 327 - -
Mch2g1024 327 Pfam Helix-loop-helix DNA-binding domain 52 102 IPR011598 GO:0046983(InterPro)
Mch2g1024 327 MobiDBLite consensus disorder prediction 251 266 - -
Mch2g1024 327 Coils Coil 91 153 - -
Mch2g1024 327 MobiDBLite consensus disorder prediction 46 60 - -
Mch2g1024 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 119 IPR036638 GO:0046983(InterPro)
Mch2g1024 327 MobiDBLite consensus disorder prediction 270 286 - -
Mch2g1024 327 SMART finulus 57 107 IPR011598 GO:0046983(InterPro)
Mch2g1024 327 MobiDBLite consensus disorder prediction 287 303 - -
Mch2g1024 327 MobiDBLite consensus disorder prediction 222 327 - -
Mch2g1024 327 MobiDBLite consensus disorder prediction 21 60 - -
Mch2g1024 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 101 IPR011598 GO:0046983(InterPro)
Mch2g1024 327 Gene3D - 48 127 IPR036638 GO:0046983(InterPro)
Mch2g1024 327 PANTHER TRANSCRIPTION FACTOR BHLH121 29 325 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Mch2g1024 327 MobiDBLite consensus disorder prediction 222 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1152 Mch-Chr11:8087487 Mch2g1024 Mch-Chr2:6942554 1.48E-13 dispersed
Mch6g0226 Mch-Chr6:1506988 Mch2g1024 Mch-Chr2:6942554 5.11E-11 transposed
Mch1g1586 Mch-Chr1:17040029 Mch2g1024 Mch-Chr2:6942554 8.29E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42931 PF00010 HLH 9.60E-09 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1024 - - - 0.0