Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1060 GCCACCACTCTCAATCTCCCTTCTCTCTCCTCTTCCTCTTCCTCTCTTTCTAACCCATCTCCCTTCCCATCTCAATCCCCTCTCTCTCTCTCTATCAAAACCCTAAACCCAAAATCCCATTCCCTCTCCCTCCCCCATCTCCGCAAGCCCCCTCTTCTCGCCTCGGTCAAAAACCCCATCTCCGACGTCTTCTCCGCCGATGACGACGACGAAAAGCCACGCGAGGAGTGCGGCGTGGTCGGAATCTACGGCGACCCGGAAGCCTCTCGCCTCTGCTATTTGGCTCTCCATGCCCTCCAGCACCGCGGCCAAGAAGGCGCCGGAATCGTCTCCGTCAACGATAACGTCCTCCAATCCGTCACCGGCGTCGGCCTCGTCTCCGAAGTCTTCAATCAAACCAAACTCGATCAGCTCCCCGGCGATTCTGCTATTGGCCATGTCCGCTACTCCACCGCCGGTTCCTCCATGCTTAAGAATGTCCAGCCCTTTGTTGCGGGCTACCGATTCGGCTCCGTTGGGGTTGCCCACAATGGTAATTTGGTTAATTATCGTTCCCTTAGGAATAAGCTTGAGGACACTGGTTCCATTTTCAATACTAGTTCTGATACTGAGGTTGTTCTTCACCTTATTGCGATTTCTAAGCATAGGCCTTTCTTGTTGAGGATTGTGGATGCCTGTGAACAGCTTGAGGGGGCTTATTCCATGGTTTTTATTACTGAAGATAAGTTGGTTGCTGTTCGTGATCCTTTTGGGTTTAGGCCTTTGGTTATGGGTAGGAGGAGTAATGGGGCTGTTGTTTTTGCTTCTGAAACTTGTGCTCTTGATTTGATTGAGGCCACATACGAGAGAGAGGTGTTTCCTGGTGAAGTTTTGGTGGTTGACAAGAATGGGATTCAATCCCTCTGTTTAATGGCCCACCCTCAGCCAAAATCTTGCATATTTGAACACATTTACTTTGCTCTCCCAAACTCTGTAGTCTTCGGGCGATCGGTGTACGAATCCCGCCGAGCATTCGGGGAGATACTAGCCACCGAAGCCCCTGTCGACTGTGATGTTGTGATTGCTGTTCCCGACTCTGGAGTAGTGGCTGCTCTTGGCTATGCAGCCAAGGCTGGTGTGGCCTTCCAACAGGGGCTCATAAGGTCTCACTACGTAGGCAGGACATTCATAGAGCCATCGCAGAAGATTCGTGACTTCGGCGTGAAGCTGAAGCTGTCGCCGGTTCGAGCAGTGTTGGAAGGGAAGAGAGTAGTGGTGGTGGATGACTCCATAGTAAGAGGCACCACATCTTCAAAGATTGTGAGGCTGATCAAGGAAGCAGGGGCAAAAGAAGTGCATATGAGGATAGCCAGCCCTCCAATCATAGGGTCATGCTACTATGGAGTGGACACACCAAGCTCAGAAGAACTGATCTCCAACAGGCTGAGTGTGGAGGAAATAAGAGAGTTCATAGGGTCTGATTCACTTGCTTTTCTGCCATTTGATAGCTTGCAGAAGCTTTTGGGTAGTGAATCTCCAAACTATTGCTATGCTTGCTTTTCAGGGAATTACCCAGTTGAGCCCAGAGAGATAAAAGTGAAAAGGGTGGGAGATTTTGTTGATGATGGCTTGAATGGGAGCTTGGAATCCATTGATGGAGGATGGGTTAAAGCCAGCAGAAACCAAAATCTTGACAATCATCTCACAGTGGAGAAACTTGTTGGGGGCCTC 1710 50.23 ATTLNLPSLSSSSSSLSNPSPFPSQSPLSLSIKTLNPKSHSLSLPHLRKPPLLASVKNPISDVFSADDDDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVSVNDNVLQSVTGVGLVSEVFNQTKLDQLPGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRSLRNKLEDTGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVLVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLIKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRLSVEEIREFIGSDSLAFLPFDSLQKLLGSESPNYCYACFSGNYPVEPREIKVKRVGDFVDDGLNGSLESIDGGWVKASRNQNLDNHLTVEKLVGGL 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7101586 7103295 + MC02g0896 Mch2g1060 681982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1060 570 CDD GPATase_N 77 327 IPR035584 -
Mch2g1060 570 Pfam Glutamine amidotransferase domain 157 274 IPR017932 -
Mch2g1060 570 MobiDBLite consensus disorder prediction 1 29 - -
Mch2g1060 570 Hamap Amidophosphoribosyltransferase [purF]. 76 517 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
Mch2g1060 570 Pfam Phosphoribosyl transferase domain 334 446 IPR000836 -
Mch2g1060 570 Gene3D - 336 500 IPR029057 -
Mch2g1060 570 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 77 296 IPR017932 -
Mch2g1060 570 CDD PRTases_typeI 339 450 IPR000836 -
Mch2g1060 570 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 77 300 IPR029055 -
Mch2g1060 570 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 72 525 - GO:0004044(PANTHER)|GO:0005737(PANTHER)|GO:0006164(PANTHER)
Mch2g1060 570 NCBIfam amidophosphoribosyltransferase 77 518 IPR005854 GO:0004044(InterPro)|GO:0009113(InterPro)
Mch2g1060 570 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 77 518 IPR029055 -
Mch2g1060 570 SUPERFAMILY PRTase-like 312 523 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1060 K00764 - - csv:101203840 967.222
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0468 . 33 189 PRT Gene Family AT1G80050 79.0 1.8e-66 248.8
Mch6g1768 . 30 180 PRT Gene Family AT1G80050 76.2 4.1e-63 237.7
Mch8g0637 . 102 251 PRT Gene Family AT1G80050 69.3 3.2e-55 211.5
Mch10g1539 . 30 145 PRT Gene Family AT1G80050 77.6 2.0e-46 182.2
Mch8g0468 . 1 148 PRT Gene Family AT5G11160 81.1 1.7e-64 242.3
Mch6g1768 . 8 145 PRT Gene Family AT5G11160 75.4 1.1e-55 213.0
Mch8g0637 . 80 217 PRT Gene Family AT5G11160 71.7 1.1e-53 206.5
Mch10g1539 . 8 145 PRT Gene Family AT5G11160 72.5 2.6e-52 201.8
Mch8g0637 . 73 256 PRT Gene Family AT1G27450 82.6 7.7e-82 300.1
Mch6g1768 . 7 180 PRT Gene Family AT1G27450 73.6 2.1e-71 265.4
Mch8g0468 . 11 183 PRT Gene Family AT1G27450 69.4 5.4e-67 250.8
Mch10g1539 . 7 145 PRT Gene Family AT1G27450 79.1 1.6e-58 222.6
Mch2g1060 . 67 550 PRT Gene Family AT2G16570 84.6 7.8e-242 833.2
Mch2g1060 . 56 550 PRT Gene Family AT4G34740 83.5 2.0e-242 835.1
Mch2g1060 . 24 523 PRT Gene Family AT4G38880 70.1 3.1e-200 694.9
Mch8g0637 . 73 256 PRT Gene Family AT1G27450 82.6 7.7e-82 300.1
Mch6g1768 . 7 180 PRT Gene Family AT1G27450 73.6 2.1e-71 265.4
Mch8g0468 . 11 183 PRT Gene Family AT1G27450 69.4 5.4e-67 250.8
Mch10g1539 . 7 145 PRT Gene Family AT1G27450 79.1 1.6e-58 222.6
Mch8g0468 . 33 189 PRT Gene Family AT1G80050 79.0 1.8e-66 248.8
Mch6g1768 . 30 180 PRT Gene Family AT1G80050 76.2 4.1e-63 237.7
Mch8g0637 . 102 251 PRT Gene Family AT1G80050 69.3 3.2e-55 211.5
Mch10g1539 . 30 145 PRT Gene Family AT1G80050 77.6 2.0e-46 182.2
Mch10g1539 . 5 104 PRT Gene Family AT4G22570 81.0 3.1e-43 171.0
Mch6g1768 . 6 104 PRT Gene Family AT4G22570 79.8 6.9e-43 169.9
Mch8g0637 . 77 169 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Mch8g0468 . 11 100 PRT Gene Family AT4G22570 78.9 2.0e-37 151.8
Mch10g1539 . 1 96 PRT Gene Family AT4G12440 83.3 3.8e-40 160.6
Mch6g1768 . 1 96 PRT Gene Family AT4G12440 81.3 1.1e-39 159.1
Mch8g0637 . 73 168 PRT Gene Family AT4G12440 78.1 1.4e-37 152.1
Mch8g0468 . 4 99 PRT Gene Family AT4G12440 78.1 3.0e-37 151.0
Mch8g0468 . 1 148 PRT Gene Family AT5G11160 81.1 1.7e-64 242.3
Mch6g1768 . 8 145 PRT Gene Family AT5G11160 75.4 1.1e-55 213.0
Mch8g0637 . 80 217 PRT Gene Family AT5G11160 71.7 1.1e-53 206.5
Mch10g1539 . 8 145 PRT Gene Family AT5G11160 72.5 2.6e-52 201.8
Mch4g1915 . 1 186 PRT Gene Family AT1G71750 64.5 2.6e-67 251.9
Mch11g1313 . 16 447 PRT Gene Family AT1G55810 79.8 1.6e-205 712.2
Mch8g1409 . 19 482 PRT Gene Family AT1G55810 74.4 8.2e-202 699.9
Mch8g1409 . 80 482 PRT Gene Family AT3G27440 75.4 8.2e-180 626.7
Mch11g1313 . 66 455 PRT Gene Family AT3G27440 68.7 1.6e-162 569.3
Mch8g1409 . 1 483 PRT Gene Family AT3G27190 86.0 7.6e-246 846.3
Mch11g1313 . 3 446 PRT Gene Family AT3G27190 69.3 1.0e-189 659.8
Mch1g0681 . 3 287 PRT Gene Family AT3G53900 66.9 3.3e-106 381.7
Mch8g1409 . 7 482 PRT Gene Family AT4G26510 75.4 1.4e-212 735.7
Mch11g1313 . 1 447 PRT Gene Family AT4G26510 78.3 1.8e-212 735.3
Mch8g1409 . 1 482 PRT Gene Family AT5G40870 86.5 8.2e-248 852.8
Mch11g1313 . 3 449 PRT Gene Family AT5G40870 68.2 3.9e-189 657.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40