Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1076 ATGAAGATTCGTTGTGATGTTTGCGACATTGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCGCCGCCTGTGACCGCCAAGTCCACCGCGCGAACAAGCTCGCCGGCAAGCACAGCCGCTTCTCTCTCATCCCATTCGCCGACGCCGCCGAATTACCGCCGCCGTGCGATATTTGCCAACTCCGGCGAGCTGTTCTGTTCTGTAAAGAAGACAGAGCAATCCTCTGCAGCGAATGCGACATTCCGATCCACGAAGCCAACGAACACACGCGGAATCACGGCCGGTTTCTCCTCACCGGAGTGAAGATTTTGCCGGCGACGGCGTCCTCCACCGGCGCCGGCCGGGTTGAAGGGGCAGCCATTGATGCTGAAAAAATTGGGTTCTCCAGGGCCTCGAGAAAGAGGGCTAAAATTGGGTCTAATGGGTTGCTTCGAGATCCCCTAATGGAGGAATTTCAGCCATCGATTGGGAATTTGGAGTTTGAAGAAAGTGGAATTAGTGATGGGGTTTCGTTTTCCAAGAGCAGTATTTCAGAGTATCTTGAGAGTTTGCCTGGATGGTGTGTGGAGGAGTTTCTTGAT 594 54.04 MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPCDICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRNHGRFLLTGVKILPATASSTGAGRVEGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGNLEFEESGISDGVSFSKSSISEYLESLPGWCVEEFLD 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7253384 7253977 - MC02g0911 Mch2g1076 681998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1076 198 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Mch2g1076 198 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Mch2g1076 198 Pfam B-box zinc finger 59 95 IPR000315 GO:0008270(InterPro)
Mch2g1076 198 Gene3D Classic Zinc Finger 1 98 - -
Mch2g1076 198 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Mch2g1076 198 SMART bboxneu5 55 102 IPR000315 GO:0008270(InterPro)
Mch2g1076 198 CDD Bbox1_BBX-like 5 47 IPR049808 -
Mch2g1076 198 ProSiteProfiles Zinc finger B-box type profile. 60 102 IPR000315 GO:0008270(InterPro)
Mch2g1076 198 CDD Bbox1_BBX-like 59 102 IPR049808 -
Mch2g1076 198 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 197 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1076 Mch-Chr2:7253384 Mch7g0133 Mch-Chr7:1637820 6.35E-34 dispersed
Mch11g0147 Mch-Chr11:924436 Mch2g1076 Mch-Chr2:7253384 1.22E-42 wgd
Mch2g1076 Mch-Chr2:7253384 Mch4g0563 Mch-Chr4:3576947 1.50E-71 wgd
Mch2g1076 Mch-Chr2:7253384 Mch8g0821 Mch-Chr8:5837414 6.20E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42933 PF00643 zf-B_box 2.70E-07 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1076 - - - 0.0