Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch2g1082 | ATGGCTACTTACTATAGCTCGAATAACGAAAGGGATACTGCTCCCATCCTCTATTCAAGGGGAGCTTTGCTTGGTTCATATGAAGAAACAGCAGTTCTTCCCCGGAATATGATGATGCATGTGAATTCTGGGACATACATGGATTCGCAAAACGGTTGTGGTCAGTTAACGTCAGTTGGAGCTGCAGGAACCACCCAACAGCAGCAAGAATTTTTATCGAATCTCGGTGGTTCCCAAATTGCTGAGCATGATTTCAATACATGGAGAGAGGACAGAAGTGAAATGCTAGGTACGAACTCGATGCGTGGACCGGCCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATACCATCTGGCATCCAAATACCTTCAATCCCATATAGGAATTCGGATATGGGTTTAACTTCATTCTCGAGTCCTAATCCGTCTAATTCTGGTGAGGATGGCTGCAGAGATGGCGGTTCTAGAGACGAACCGTTGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGAATTATCTCAGTACAACATGTCTAGTATTGCAAGAACCATGCCCAATTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCCTTAAAGCGACCAAATAATGAGAGAAACCCGAGCTCACATGACCATGAAACTAGGAGCACAAAGAACGGTGATTCAGGAACCAAAAATGACAGTTCGATGCTCACAGCTAGCGGAGTATCTTCGAACCCTCAAGAAACTGGTAGCAATTCAACATGTGAGCTCTCACATGCTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCACCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCAGGATGTGGAGCTTCTAAGCCATATACTGCACTTGCGCTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGCCAAGTTAGAGCTACCCGTAAAAGCCTCGGAGAGCACGAAAATTCTGGAAATGACAAAGGAGTTGGAATCACTCGTCTTCGATATGTGGACCAGCAGTTAAGGCAACAGAGGGCTCTTCAGCAGCTTGGAATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCCGAGAACTCTGTTTCGATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAAATCATGCTGGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCACGTGTGCGTCTTTGGAAACCAATGGTAGAGGAGATGTACAAGGAAGAGATAGGCAGTGCAGACATGGACTCTATATCATCATCTGAAAATGCTGGCAGGGCAACCAAAGGAGATAACAGGACCTTGGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGTTCAACAGGCACCGAAAGATGTAGCGCTGGAGATATTATGGATTTGAAATCTGATCAAGTCTCCAATCTTGGATATTCGAGTTCCACCCGGCTAGCCAGCTTCCAAAATGGTGCTCACATAGAACCGCAAAACGAGCTGGTGAAGTCAAGGGAGGAGCTAAGGCCTAATGTAAATAACTCCAATTTCTTTCCTGATGCAATTGTACACTCTCAAGCAGGGAGTGACAGGTTTATGGCTGCTGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTCAGGACGGTTAGCGGGGTATCGCTTACCCTGGGTTTGCAGCATTGCGAGGGCGGTGGCATACCTATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGATGACATGTACAATGCCACAGCGTCTTCTCTCGGGGAAACAGTTCACTTTGAATGTGTAAATGCCGGGAACCCGCAACCGAGGTTCGGAACTTCTCACCTTTATCATGATTTTGTTATGTAA | 2028 | 45.71 | MATYYSSNNERDTAPILYSRGALLGSYEETAVLPRNMMMHVNSGTYMDSQNGCGQLTSVGAAGTTQQQQEFLSNLGGSQIAEHDFNTWREDRSEMLGTNSMRGPANVLHGGQNLQGQGLSLTLSTQIPSGIQIPSIPYRNSDMGLTSFSSPNPSNSGEDGCRDGGSRDEPLRNGENLPPNFQELAKGELSQYNMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNPSSHDHETRSTKNGDSGTKNDSSMLTASGVSSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSADMDSISSSENAGRATKGDNRTLEDDKEEDLQQSASSTGTERCSAGDIMDLKSDQVSNLGYSSSTRLASFQNGAHIEPQNELVKSREELRPNVNNSNFFPDAIVHSQAGSDRFMAAAAAYHMSELGRFRTVSGVSLTLGLQHCEGGGIPMPAGTHHGFAAMRGDDMYNATASSLGETVHFECVNAGNPQPRFGTSHLYHDFVM | 675 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 7309966 | 7314929 | + | MC02g0917 | Mch2g1082 | 682004 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch2g1082 | 675 | Gene3D | - | 395 | 474 | - | - | |
Mch2g1082 | 675 | MobiDBLite | consensus disorder prediction | 474 | 488 | - | - | |
Mch2g1082 | 675 | SUPERFAMILY | Homeodomain-like | 401 | 468 | IPR009057 | - | |
Mch2g1082 | 675 | ProSiteProfiles | 'Homeobox' domain profile. | 397 | 460 | IPR001356 | GO:0003677(InterPro) | |
Mch2g1082 | 675 | Coils | Coil | 282 | 302 | - | - | |
Mch2g1082 | 675 | SMART | prehox3 | 195 | 350 | IPR006563 | - | |
Mch2g1082 | 675 | MobiDBLite | consensus disorder prediction | 247 | 279 | - | - | |
Mch2g1082 | 675 | MobiDBLite | consensus disorder prediction | 224 | 279 | - | - | |
Mch2g1082 | 675 | CDD | homeodomain | 400 | 461 | IPR001356 | GO:0003677(InterPro) | |
Mch2g1082 | 675 | MobiDBLite | consensus disorder prediction | 142 | 159 | - | - | |
Mch2g1082 | 675 | MobiDBLite | consensus disorder prediction | 473 | 520 | - | - | |
Mch2g1082 | 675 | MobiDBLite | consensus disorder prediction | 489 | 504 | - | - | |
Mch2g1082 | 675 | Pfam | Homeobox KN domain | 417 | 456 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Mch2g1082 | 675 | MobiDBLite | consensus disorder prediction | 142 | 181 | - | - | |
Mch2g1082 | 675 | FunFam | BEL1-like homeodomain protein 4 | 403 | 465 | - | - | |
Mch2g1082 | 675 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 143 | 496 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch2g1082 | 675 | MobiDBLite | consensus disorder prediction | 224 | 246 | - | - | |
Mch2g1082 | 675 | Pfam | Associated with HOX | 202 | 349 | IPR006563 | - | |
Mch2g1082 | 675 | SMART | HOX_1 | 400 | 464 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0220 | Mch-Chr2:1684991 | Mch2g1082 | Mch-Chr2:7309966 | 3.56E-89 | dispersed | |
Mch2g1082 | Mch-Chr2:7309966 | Mch9g0411 | Mch-Chr9:3053525 | 3.22E-93 | dispersed | |
Mch2g1082 | Mch-Chr2:7309966 | Mch5g1540 | Mch-Chr5:16429301 | 1.73E-91 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42934 | PF07526 | POX | 4.00E-51 | No_clan | Mch | TF |
Pathway information
