Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1082 ATGGCTACTTACTATAGCTCGAATAACGAAAGGGATACTGCTCCCATCCTCTATTCAAGGGGAGCTTTGCTTGGTTCATATGAAGAAACAGCAGTTCTTCCCCGGAATATGATGATGCATGTGAATTCTGGGACATACATGGATTCGCAAAACGGTTGTGGTCAGTTAACGTCAGTTGGAGCTGCAGGAACCACCCAACAGCAGCAAGAATTTTTATCGAATCTCGGTGGTTCCCAAATTGCTGAGCATGATTTCAATACATGGAGAGAGGACAGAAGTGAAATGCTAGGTACGAACTCGATGCGTGGACCGGCCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATACCATCTGGCATCCAAATACCTTCAATCCCATATAGGAATTCGGATATGGGTTTAACTTCATTCTCGAGTCCTAATCCGTCTAATTCTGGTGAGGATGGCTGCAGAGATGGCGGTTCTAGAGACGAACCGTTGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGAATTATCTCAGTACAACATGTCTAGTATTGCAAGAACCATGCCCAATTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCCTTAAAGCGACCAAATAATGAGAGAAACCCGAGCTCACATGACCATGAAACTAGGAGCACAAAGAACGGTGATTCAGGAACCAAAAATGACAGTTCGATGCTCACAGCTAGCGGAGTATCTTCGAACCCTCAAGAAACTGGTAGCAATTCAACATGTGAGCTCTCACATGCTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCACCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCAGGATGTGGAGCTTCTAAGCCATATACTGCACTTGCGCTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGCCAAGTTAGAGCTACCCGTAAAAGCCTCGGAGAGCACGAAAATTCTGGAAATGACAAAGGAGTTGGAATCACTCGTCTTCGATATGTGGACCAGCAGTTAAGGCAACAGAGGGCTCTTCAGCAGCTTGGAATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCCGAGAACTCTGTTTCGATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAAATCATGCTGGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCACGTGTGCGTCTTTGGAAACCAATGGTAGAGGAGATGTACAAGGAAGAGATAGGCAGTGCAGACATGGACTCTATATCATCATCTGAAAATGCTGGCAGGGCAACCAAAGGAGATAACAGGACCTTGGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGTTCAACAGGCACCGAAAGATGTAGCGCTGGAGATATTATGGATTTGAAATCTGATCAAGTCTCCAATCTTGGATATTCGAGTTCCACCCGGCTAGCCAGCTTCCAAAATGGTGCTCACATAGAACCGCAAAACGAGCTGGTGAAGTCAAGGGAGGAGCTAAGGCCTAATGTAAATAACTCCAATTTCTTTCCTGATGCAATTGTACACTCTCAAGCAGGGAGTGACAGGTTTATGGCTGCTGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTCAGGACGGTTAGCGGGGTATCGCTTACCCTGGGTTTGCAGCATTGCGAGGGCGGTGGCATACCTATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGATGACATGTACAATGCCACAGCGTCTTCTCTCGGGGAAACAGTTCACTTTGAATGTGTAAATGCCGGGAACCCGCAACCGAGGTTCGGAACTTCTCACCTTTATCATGATTTTGTTATGTAA 2028 45.71 MATYYSSNNERDTAPILYSRGALLGSYEETAVLPRNMMMHVNSGTYMDSQNGCGQLTSVGAAGTTQQQQEFLSNLGGSQIAEHDFNTWREDRSEMLGTNSMRGPANVLHGGQNLQGQGLSLTLSTQIPSGIQIPSIPYRNSDMGLTSFSSPNPSNSGEDGCRDGGSRDEPLRNGENLPPNFQELAKGELSQYNMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNPSSHDHETRSTKNGDSGTKNDSSMLTASGVSSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSADMDSISSSENAGRATKGDNRTLEDDKEEDLQQSASSTGTERCSAGDIMDLKSDQVSNLGYSSSTRLASFQNGAHIEPQNELVKSREELRPNVNNSNFFPDAIVHSQAGSDRFMAAAAAYHMSELGRFRTVSGVSLTLGLQHCEGGGIPMPAGTHHGFAAMRGDDMYNATASSLGETVHFECVNAGNPQPRFGTSHLYHDFVM 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7309966 7314929 + MC02g0917 Mch2g1082 682004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1082 675 Gene3D - 395 474 - -
Mch2g1082 675 MobiDBLite consensus disorder prediction 474 488 - -
Mch2g1082 675 SUPERFAMILY Homeodomain-like 401 468 IPR009057 -
Mch2g1082 675 ProSiteProfiles 'Homeobox' domain profile. 397 460 IPR001356 GO:0003677(InterPro)
Mch2g1082 675 Coils Coil 282 302 - -
Mch2g1082 675 SMART prehox3 195 350 IPR006563 -
Mch2g1082 675 MobiDBLite consensus disorder prediction 247 279 - -
Mch2g1082 675 MobiDBLite consensus disorder prediction 224 279 - -
Mch2g1082 675 CDD homeodomain 400 461 IPR001356 GO:0003677(InterPro)
Mch2g1082 675 MobiDBLite consensus disorder prediction 142 159 - -
Mch2g1082 675 MobiDBLite consensus disorder prediction 473 520 - -
Mch2g1082 675 MobiDBLite consensus disorder prediction 489 504 - -
Mch2g1082 675 Pfam Homeobox KN domain 417 456 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch2g1082 675 MobiDBLite consensus disorder prediction 142 181 - -
Mch2g1082 675 FunFam BEL1-like homeodomain protein 4 403 465 - -
Mch2g1082 675 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 143 496 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch2g1082 675 MobiDBLite consensus disorder prediction 224 246 - -
Mch2g1082 675 Pfam Associated with HOX 202 349 IPR006563 -
Mch2g1082 675 SMART HOX_1 400 464 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0220 Mch-Chr2:1684991 Mch2g1082 Mch-Chr2:7309966 3.56E-89 dispersed
Mch2g1082 Mch-Chr2:7309966 Mch9g0411 Mch-Chr9:3053525 3.22E-93 dispersed
Mch2g1082 Mch-Chr2:7309966 Mch5g1540 Mch-Chr5:16429301 1.73E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42934 PF07526 POX 4.00E-51 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1082 - - - 0.0