Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1136 ATGGAGGACTGCTTCAGCAGCGATGAGGACTACTACGACTCCGATCGAGAGTCTCTTCACGGTCTCGAGAACGAGGAGTCCGAAATTCAGTGGGCCCCCGAGGGTCCCGCGACTAAGGTTATTACTAAAGAATCACTCCTTGCGGCACAGAAGGAGGACATGCGTAGAGTAATGGACTTGCTATCATTGAGGGAATACCACGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTCTGCAGTATTTGTGGAGAAAGGGAAAAGTTACTTGTTTGCTACAGCTGGTGTTACTACGATTGAGCAACAAAGTAATAGTTCCTCTGAGCCTTCCTCAATGGTGATGTGCGATATCTGCATGGAGGAAGTACATGGCAATGAAGCAACAAGGATGGACTGTGGTCATTGCTTTTGCAATAACTGTTGGACTGAACATTTTATTGTGAAAATAAATGAGGGCCAGAGTCGGAGAATCAGGTGCATGGCCCACAAATGTAATGCTATCTGTGATGAAGCAGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCAGATCTTGCCAACAAATTTGATCGTTTTCTTCTTGAGTCGTACATTGAGGATAATAAAAGAGTCAAGTGGTGTCCAAGTACCCCTCATTGTGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTTCAGTTTTGTTTCAGCTGCTTATCAGAAGCTCACTCGCCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAATCTGAAACAGTTAACTGGATTACGGTACATACAAAGCCCTGTCCAAAGTGCCACAAACCTGTCGAGAAGAATGGTGGCTGTAACCTCGTCAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCTACCGGTCGAGAACATACTTGGTCGAGTATTTCTGGACACAGTTGTGGGCGTTACAAAGAAGAATCAGAACAGAAAGCTGAACGAGCAAAGCGGGATTTGTACCGCTATATGCATTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCAATACAAGAGAAGATCTCAATTTCTGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTACAGACTATTCAGATCAAGGCGGGTTCTTTCGTATTCATACCCATTTGCATTTTATATGTTTGGGGATGAGCTCTTCAAAGATGAGATGACACAGGAGGAAAGAGAGATAAAGCAACATCTGTTCGAGGACCAGCAACAGCAGCTTGAGGCAAATGTTGAGAAACTGTCCAAGTTCTTAGAGGAACCGTTTGATCAATACACTAAAGATAAGGTTATGGAGATAAGGATGCAAGTCATCAATCTGTCAGTTATCACTGATACCCTCTGTAAGAAGATGTACGACTGTATTGAGAATGATCTTTTGGGTTCTCTCGAACTGGGTATTCACAATATTGCTCCTTACAAGTCGAAGGGCATCGAGAAGGCATTGGAACTTTCTGCTTCTTGGAACAGCAGAGCAAATACTACAGACAAATATCTGCCATCAGACTGTGGTACAAGTGGGGGTTTGTCAGAACGCGATCGATCCACTGGCTTGAATTCTGAGGAGAATGGATGCTCTTCTAGGAAGCGTGCCAGAGCAGAAGGTGTTGCTGGCAACTTTTTTGATCTAAACTTGCCTGCTGGGGTGGTTGATAGGAACTGA 1770 43.79 MEDCFSSDEDYYDSDRESLHGLENEESEIQWAPEGPATKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLSAVFVEKGKSYLFATAGVTTIEQQSNSSSEPSSMVMCDICMEEVHGNEATRMDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLYRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSASWNSRANTTDKYLPSDCGTSGGLSERDRSTGLNSEENGCSSRKRARAEGVAGNFFDLNLPAGVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7745680 7750833 - MC02g0966 Mch2g1136 682058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1136 589 Pfam Ariadne domain 329 589 IPR045840 -
Mch2g1136 589 CDD BRcat_RBR_ANKIB1 197 261 - -
Mch2g1136 589 MobiDBLite consensus disorder prediction 535 564 - -
Mch2g1136 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 360 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Mch2g1136 589 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 49 87 IPR048962 -
Mch2g1136 589 CDD RING-HC_RBR_TRIAD1 117 170 - -
Mch2g1136 589 CDD Rcat_RBR_ARI1-like 273 326 - -
Mch2g1136 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Mch2g1136 589 SUPERFAMILY RING/U-box 260 325 - -
Mch2g1136 589 SUPERFAMILY RING/U-box 191 259 - -
Mch2g1136 589 Pfam IBR domain 272 314 IPR054694 -
Mch2g1136 589 SUPERFAMILY RING/U-box 114 202 - -
Mch2g1136 589 FunFam RBR-type E3 ubiquitin transferase 248 496 - -
Mch2g1136 589 MobiDBLite consensus disorder prediction 544 560 - -
Mch2g1136 589 SMART ibrneu5 190 252 IPR002867 GO:0008270(InterPro)
Mch2g1136 589 SMART ibrneu5 260 325 IPR002867 GO:0008270(InterPro)
Mch2g1136 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Mch2g1136 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Mch2g1136 589 MobiDBLite consensus disorder prediction 1 27 - -
Mch2g1136 589 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270(InterPro)
Mch2g1136 589 Gene3D - 248 496 - -
Mch2g1136 589 FunFam RBR-type E3 ubiquitin transferase 113 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1136 K11968 - - csv:101205066 1135.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1136 Mch-Chr2:7745680 Mch8g2501 Mch-Chr8:27934760 2.25E-56 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g1136 . 164 590 ARIADNE family AT4G34370 73.0 3.0e-185 644.8
Mch2g1136 . 58 542 ARIADNE family AT2G16090 77.4 7.5e-225 776.5
Mch2g1136 . 38 543 ARIADNE family AT3G27710 62.0 5.4e-184 641.0
Mch2g1136 . 44 523 ARIADNE family AT3G27720 54.3 8.5e-144 507.3
Mch8g2501 . 61 548 ARIADNE family AT1G05890 72.7 3.8e-223 771.2
Mch7g0178 . 127 626 ARIADNE family AT1G05890 69.0 2.3e-212 735.3
Mch8g2501 . 24 595 ARIADNE family AT1G65430 75.3 7.3e-264 906.4
Mch7g0178 . 110 679 ARIADNE family AT1G65430 68.9 1.1e-240 829.3
Mch8g2501 . 48 458 ARIADNE family AT2G31780 57.1 4.6e-149 524.6
Mch7g0178 . 112 545 ARIADNE family AT2G31780 54.5 3.6e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46