Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1145 ATGCCGACCGCCGCCGTCCCCTCCCCGTCTCCTTCTCCTTCTCCTTCCTCCTCCGCCCTCAATTTCGTCCCGCCGTCGTCTCTTCAGCCGCCCAAGCTCCCCGTCGACTTCAGTCCTCCTCTAATTGCCATGGTTGTGGTCATCGCTACGGCCTTCTTGATCGTCACCTACTCCCGCCTCATCTCCCGCCACCTCATCCCTCCCATCCTCCACCTCCTCCGCCTTCACCACCGCCGTTGGCGCCGCTGGAGGCGCTGCCGCCGCCGTGCCAGATCTTATCTTCCGTCTTCCTCCGCCGGCGACCTGGATTCCCTCCCTTTCGACTCGCCTAATTTCTTCGAGCCTGCCGATGCCTTCCACGTGTTCTCTCCGTACGGACTCGATGAGTCTGTTATCAAGACTATTCCGCTCTCCGTCTATACTGCCAAGAGCCGCCGCGATAGCCGCGACCGTGAGTGCGCCGTTTGCCTTCTGGAGTTCGAGGACGACGACTACGTCCGCACGCTTCCGGTGTGCTCCCACGCGTTTCACGTTGACTGCATCGACGTTTGGCTTAGGTCTCACGCAAACTGTCCGCTCTGTCGCGCGGTGGTTTTCCGGCCGGAATCTCCGTTTACTCCCGTGATGGCGGCGAGAATCCGGCCGAGCCTCGACGATACGATCTTACGGAGTATCGTATTGGAGCCGCTCGCGGGAGCGACTAGGGATTCTAACGCAACGGTGTCGGAGATCACGCCGTGCGTCGACGAACCGCGGAATAGCAACTCCGAGGATCAAATCAACGGCCGAGACTTCTTGCTGAAGCGATCGTATTCGTTCGGATTCGAACGGAGCTTGGCGTCGGAACGAATGATCCTGGAGCCGGCAACGGCGTCGCCTTGGAGGTACCGCCGCGGAAGCTTCTGGAGCAAACGGCCGTCTCCTTTCGGATCTCTGCCGAAGGCGAGAGTATTCTCCTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGCCGAGGATTCTTCCCGCTATCGGAATCAAGCTGGAGATTCTCAAACGGCGCAGGCGGCGGTTCGTCGAGACGAACCAAATCGATGACGAGTCCGATGTTTCTCCGATCATCGGTAACCGGCGGAGGAGCCGCCGCGTTCTCGTCGAGCCGGTTGAGATGCGGAGATCCCGAGGCGTTACTGTCACCGGAAAGATTCAACCGAAGA 1203 59.85 MPTAAVPSPSPSPSPSSSALNFVPPSSLQPPKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRLHHRRWRRWRRCRRRARSYLPSSSAGDLDSLPFDSPNFFEPADAFHVFSPYGLDESVIKTIPLSVYTAKSRRDSRDRECAVCLLEFEDDDYVRTLPVCSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLAGATRDSNATVSEITPCVDEPRNSNSEDQINGRDFLLKRSYSFGFERSLASERMILEPATASPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGFFPLSESSWRFSNGAGGGSSRRTKSMTSPMFLRSSVTGGGAAAFSSSRLRCGDPEALLSPERFNRR 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7788923 7790125 + MC02g0974 Mch2g1145 682067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1145 401 MobiDBLite consensus disorder prediction 1 21 - -
Mch2g1145 401 SUPERFAMILY RING/U-box 144 201 - -
Mch2g1145 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 199 IPR013083 -
Mch2g1145 401 FunFam RING-H2 finger protein ATL65 120 199 - -
Mch2g1145 401 SMART ring_2 153 194 IPR001841 -
Mch2g1145 401 CDD RING-H2_EL5-like 152 195 - -
Mch2g1145 401 PANTHER RING-H2 FINGER PROTEIN ATL16 14 244 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Mch2g1145 401 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Mch2g1145 401 Pfam Ring finger domain 152 195 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1145 Mch-Chr2:7788923 Mch6g2186 Mch-Chr6:24185296 9.54E-23 dispersed
Mch2g1145 Mch-Chr2:7788923 Mch5g0230 Mch-Chr5:1521738 1.29E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1145 - - - 0.0