Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1153 ATGACTGATTTTTCAGCTTTCCGAACGGGCGGTTTCAAAAGGAAAATGCCGCGCCCTTATTTCCATAAGCTGATTCTCTCATCCACTATCCAAGCTAGGAAATTGAGAATCCCAGATACTTTTCTCAGGATGATCAGGGATGAGCTTTCTGCTGTTGCAACACTTACTGTTCCTGACGGCCATGTTTGGCGCGTGGGGTTGAGGAAAGCCGATAATAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTTGAGCATTACTCTATACGGGTTGGGTATTTCTTAGTATTCAGATATGAGGGAAACTCATCGTTCTGTGTTTTTATGTTTAATCTTAATACATCTGAAATAAACTACCAATCTGCTGCTCTCGGTGGTAACCAAAGGAATAATTACAGCATTCAAAACCGAATCTTCGAAGAAATGGAGGATTATGACATTCCTGAAGGCATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTGCGAAACAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAAGCTGCAAGTACGTTGCAGGCCGAATATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATCTGGGTGATGATGTACACAGAGTTAAAAAAAGTGGAAGCAAAAAGCGAAAAATTGATTCTAGCGAGCACCATCCATCTACTCATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCCTCTGCTCGAAAGAGAACCGTGACAGCAGAAGAGAGAGAAAGAGCTATCAATGCTGCAAAAGCTTTCGAGCCCGCTAATCCTTTCTGCAGGGTCGTCTTGCGACCATCTTATCTATACAGAGGTTGTATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGATGGGAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCCAAGTTAAGTCAGGGATGGTATGAATTTTGCCTGGAGAATAATCTGGGGGAGGGCGACGTTTGTGTGTTTGAGCTTCTCAGGATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGATGCTGGACGACTGGTAAACCCAAATCCTGCCAGCATGATGAATCCGCCTCCGCTGCGAAGCGTTACCCAAATTAAGCTGATCAGAAATTAG 1233 42.34 MTDFSAFRTGGFKRKMPRPYFHKLILSSTIQARKLRIPDTFLRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWHGFLEHYSIRVGYFLVFRYEGNSSFCVFMFNLNTSEINYQSAALGGNQRNNYSIQNRIFEEMEDYDIPEGIPSNQSMNSGSLRNKLFGDEWNLHQSKAASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDVHRVKKSGSKKRKIDSSEHHPSTHSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEDAGRLVNPNPASMMNPPPLRSVTQIKLIRN 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7861230 7864398 - MC02g0982 Mch2g1153 682075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1153 410 CDD B3_DNA 19 111 IPR003340 GO:0003677(InterPro)
Mch2g1153 410 SUPERFAMILY DNA-binding pseudobarrel domain 279 380 IPR015300 -
Mch2g1153 410 Gene3D - 261 381 IPR015300 -
Mch2g1153 410 CDD B3_DNA 282 377 IPR003340 GO:0003677(InterPro)
Mch2g1153 410 PANTHER B3 DOMAIN-CONTAINING 18 364 IPR050655 -
Mch2g1153 410 Pfam B3 DNA binding domain 23 108 IPR003340 GO:0003677(InterPro)
Mch2g1153 410 Pfam B3 DNA binding domain 286 377 IPR003340 GO:0003677(InterPro)
Mch2g1153 410 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677(InterPro)
Mch2g1153 410 Gene3D - 13 114 IPR015300 -
Mch2g1153 410 SMART B3_2 284 379 IPR003340 GO:0003677(InterPro)
Mch2g1153 410 SMART B3_2 21 113 IPR003340 GO:0003677(InterPro)
Mch2g1153 410 MobiDBLite consensus disorder prediction 221 242 - -
Mch2g1153 410 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Mch2g1153 410 ProSiteProfiles B3 DNA-binding domain profile. 284 379 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1153 Mch-Chr2:7861230 Mch2g1398 Mch-Chr2:10161829 2.46E-22 dispersed
Mch2g1152 Mch-Chr2:7854136 Mch2g1153 Mch-Chr2:7861230 8.65E-71 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42941 PF02362 B3 5.70E-18 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1153 - - - 0.0