Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1266 ATGGCGGTGGAGCTCCTCCTCGGCTGCACCACCACCGCCACCGCCGCCATGGAAGACACCGCCGTCCAAGAAGCCGCCTCCGGCCTTGAAACCCTCAAAAAGCTCATCAAATGCCTCTCCCACTCATCCCCGGAGATGGAGTGCGAAGCCGTCGCAAACGCCGCCGTCTCCCACTTCAAGAAGGTCATTTCCCTGCTCGGCCGGCCGGCGACTACCCGAACCGGCCACGCCCGCTTCCGCCGTGCCCCTCTCGATTCCTCTCCTCCTCCTCCACCGCCGCCGCCATCTAATTCCGATTCCAAGGTCTACTACGCCACCCCCATTCAGCAGATTCCTCCGCCGGAGCGGCTCGATTCGGCCACCACCATTAATTTCTCCTACTCCTCCGCCGCCGACCACCACCACCACTACCCGCCGCCGCAGCCCTCCTCCGGTTCTTTCCAGATCACCGATCTCTCCCGTGTCTCTTCCGTCTCCAAGCCCCCTCTCAAGCGAAAGTGCGCCTCTGAGAATCCCGCCTCCGGGAAGTGCGGCGGATCCTCCGGCGGCCGCTGCCACTGCTCCAAGAAACGAAAATTGAGGGTGAAGAGGGTGGTGAGAGTGCCAGCCATAAGCTCGAAGAACGCCGACATTCCACCGGACGATTATTCATGGCGGAAGTACGGGCAGAAGCCAATCAAGGGCTCTCCATATCCAAGAGGTTACTATAAGTGCAGCAGTTTAAGAGGTTGCCCAGCGAGAAAGCACGTGGAGAGAGCCTCGGATGATCCATCTATGTTAATAGTAACTTATGAAGGCGACCATAATCACTCCCAATCAGTTGCAGAGGCCTCTAGTTTAATCCTTGAATCTTGGTGA 858 58.86 MAVELLLGCTTTATAAMEDTAVQEAASGLETLKKLIKCLSHSSPEMECEAVANAAVSHFKKVISLLGRPATTRTGHARFRRAPLDSSPPPPPPPPSNSDSKVYYATPIQQIPPPERLDSATTINFSYSSAADHHHHYPPPQPSSGSFQITDLSRVSSVSKPPLKRKCASENPASGKCGGSSGGRCHCSKKRKLRVKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8784493 8786509 - MC02g1065 Mch2g1266 682188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1266 285 Gene3D WRKY domain 196 273 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g1266 285 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 275 IPR044810 GO:0003700(InterPro)
Mch2g1266 285 FunFam WRKY transcription factor 65 196 273 - -
Mch2g1266 285 MobiDBLite consensus disorder prediction 80 102 - -
Mch2g1266 285 Pfam WRKY DNA -binding domain 214 270 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g1266 285 ProSiteProfiles WRKY domain profile. 207 273 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g1266 285 SUPERFAMILY WRKY DNA-binding domain 208 272 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g1266 285 MobiDBLite consensus disorder prediction 84 98 - -
Mch2g1266 285 MobiDBLite consensus disorder prediction 155 186 - -
Mch2g1266 285 SMART WRKY_cls 212 272 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch2g1266 285 Pfam Plant zinc cluster domain 164 210 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1266 Mch-Chr2:8784493 Mch9g0924 Mch-Chr9:7413522 8.43E-54 dispersed
Mch1g1230 Mch-Chr1:14640885 Mch2g1266 Mch-Chr2:8784493 1.10E-87 wgd
Mch11g0325 Mch-Chr11:2005560 Mch2g1266 Mch-Chr2:8784493 3.22E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42947 PF03106 WRKY 2.50E-26 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1266 - - - 0.0