Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1272 ATGGGAACCCTCTCCTTCCCAATTTCATCCCCAAAATCCCGACTGCCACTCTCCCGGAATCGAATTGCATTTTCGACGCCTTTTCTTCCAACATCTCTCCCTTCTCATGCATTTCGCGTTCGTAATTTACCCAATCTCCACCTACGCCTCGTTCCCTGCACTGCTGCGGCAGCCGATCAATCAAATCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCATCACCACCACCACCACCACCACCACCACCATGGTCACCACCATTGTGATCATGGCGTGGAGCTGACTGCGCCTCAGAGAGCGGTGGTTGGATTTGCCAAAGCCATTAGGTGGACGGACTTGGCGAATTATCTGAGGGAGCACTTGCAATTATGTTGCTGTTCTATGGCTTTGTTCGTAGCTGCTGCTGTTTGCCCTTATTTGGTGCCCAAGCCCATTGTGAAGCCTCTACAAAATGCTTTCATTGTCGTTGCTTTCCCTCTAGTCGGGGTATCCTCATCCCTTGACGCTTTAACTGATATTAGTGGTGGAAAAGTAAACATCCATGTACTTATGGCTCTTGCAGCCTTTGCATCCATCTTTATGGGGAACTCCTTGGAAGGAGGACTACTACTTGCCATGTTTAATTTATCTCACATTGCGGAAGAGTATTTTACAAGTCGTTCAATGATTGATGTCAAAGAGTTGAAGGAAAACCATCCAGATTCTGCCCTTGTTTTAGATACAGATGATGGTAAGCTTTCCAATATTACAGATTTGTCCTACCAGAAGGTGCCTGTCCATGATGTACAGGTGAATTCCTATATCTTGGTTGGAGCTGGTGAGTCTGTGCCTGTAGATTGTGAAGTTTTCCAAGGTAGCGCTACAGTCACTATTGAGCACCTAACAGGCGAAATAAAACCTTTAGAGATTACGGTTGGAGACAGAGTTCCTGGTGGTGCAAGAAACTTGGATGGTAGGATAATTGTTAAGGCAACAAAGACCTGGAAAGAGTCAACACTGAGTCGAATAGTGAACTTGACTGAAGAGGCACAACTGAATAAACCAAGACTTCAGCGGTGGCTGGATGAATTTGGCGAGCATTATAGCAAAGCAGTTGTAGTTTTGTCCATTGCTATTGCACTCGTTGGTCCAATAATGTTCAAGTGGCCATTTATTGGTACATCAGCTTGCAGAGGATCCGTTTACAGAGCTCTTGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCCGTTGCACCATTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGCCGTGTATTAGATGCATTAGCTTCTTGTCACACTATAGCATTTGATAAAACTGGGACGTTGACTACTGGAGGTCTTATTTTCAAAGCAATTGAACCAATTTACGGACACAAGGTCAGAGAAAACAGATCAGACTTTGGTCCCTGTTGCATTCCCTGCTGTGAAACTGAAGCCCTTGCTGTAGCAGCTGCCATGGAGAAGGGCACTACTCACCCAATTGGGAGAGCTGTGGTTGACCATAGTATGGGAAAAGACCTCCCATCCTTTTCTGTCCAAAATTTGGAGTATTTTCCTGGTAGAGGACTGGTTGCAACTCTGGATGGTACTGAGTCAGGAACTAGAGGTGGGAAACTATTGAAAGCATCTCTTGGTTCTTTGGATTTCATCACTTCACTCCACAAATCAGAAATTAAATCAAAAGAGATCAAAGAAGCTGTGAGCACATCTTCATATGGAAGTGAATTTGTTCATGCTGCTCTTGCAGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTAGAGTTTCAAGTGTAATAGTAGAATTAAGAGATGTGGCAAAACTCCATGTTATGATGTTAACTGGAGATCATGAGTCAAGTGCATGGAGAGTGGCGAAGGCAGTGGGCATCAATGAAGTCCACTTCAGTCTGAAGCCTGAAGATAAGCTTAGTCACGTGAAAAGTATCTCTAGGGAGAACGGAGGAGGGCTGATCATGGTTGGTGAAGGCATTAATGATGCTCCAGCACTTGCTGCTGCTACCGTTGGAATAGTGCTTGCTCAACGTGCTAGCGCAACTGCTATAGCTGTGGCAGATGTTCTGTTGCTGCGGGATAACATTTCTGGTGTACCATTTTGTGTTGCCAAGTCCCGCCAGACGACTGCCCTAGTTAAACAGAATGCTAGTCTTGCCTTATTTTCAATATTTTTGGCTTCCCTTCCGGCAGTTTTAGGGTTTCTTCCCTTGTGGTTAACGGTACTTTTGCATGAAGGTGGTACTCTTCTGGTTTGCCTAAATTCGATACGCGCTCTGAATGATCCGAGTTGGTCCTGGAGGCAGGACTTGAAGCAATTGCTAATGGGACTGAAATTTAGGGGGTCGCAGCCAAGCCTTGATACCAGCTCTACCAGTACCACTGTACAATCTTCCCTTTTATAG 2502 45.92 MGTLSFPISSPKSRLPLSRNRIAFSTPFLPTSLPSHAFRVRNLPNLHLRLVPCTAAAADQSNHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHCDHGVELTAPQRAVVGFAKAIRWTDLANYLREHLQLCCCSMALFVAAAVCPYLVPKPIVKPLQNAFIVVAFPLVGVSSSLDALTDISGGKVNIHVLMALAAFASIFMGNSLEGGLLLAMFNLSHIAEEYFTSRSMIDVKELKENHPDSALVLDTDDGKLSNITDLSYQKVPVHDVQVNSYILVGAGESVPVDCEVFQGSATVTIEHLTGEIKPLEITVGDRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLSIAIALVGPIMFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGRVLDALASCHTIAFDKTGTLTTGGLIFKAIEPIYGHKVRENRSDFGPCCIPCCETEALAVAAAMEKGTTHPIGRAVVDHSMGKDLPSFSVQNLEYFPGRGLVATLDGTESGTRGGKLLKASLGSLDFITSLHKSEIKSKEIKEAVSTSSYGSEFVHAALAVDGKVTLIHLEDRPHPRVSSVIVELRDVAKLHVMMLTGDHESSAWRVAKAVGINEVHFSLKPEDKLSHVKSISRENGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCVAKSRQTTALVKQNASLALFSIFLASLPAVLGFLPLWLTVLLHEGGTLLVCLNSIRALNDPSWSWRQDLKQLLMGLKFRGSQPSLDTSSTSTTVQSSLL 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8862725 8871940 - MC02g_new0203 Mch2g1272 682194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1272 833 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 60 826 IPR051949 -
Mch2g1272 833 NCBIfam heavy metal translocating P-type ATPase 192 790 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Mch2g1272 833 Gene3D - 231 356 - -
Mch2g1272 833 SFLD p-type atpase 440 741 IPR044492 -
Mch2g1272 833 Gene3D - 451 739 IPR023214 -
Mch2g1272 833 MobiDBLite consensus disorder prediction 57 102 - -
Mch2g1272 833 Gene3D - 469 619 IPR023299 GO:0000166(InterPro)
Mch2g1272 833 SUPERFAMILY Calcium ATPase, transduction domain A 262 351 IPR008250 -
Mch2g1272 833 SUPERFAMILY Calcium ATPase, transmembrane domain M 194 743 IPR023298 -
Mch2g1272 833 ProSitePatterns E1-E2 ATPases phosphorylation site. 460 466 IPR018303 -
Mch2g1272 833 SFLD Haloacid Dehalogenase 440 741 - -
Mch2g1272 833 Pfam haloacid dehalogenase-like hydrolase 456 701 - -
Mch2g1272 833 SUPERFAMILY HAD-like 456 788 IPR036412 -
Mch2g1272 833 MobiDBLite consensus disorder prediction 62 99 - -
Mch2g1272 833 NCBIfam HAD-IC family P-type ATPase 261 479 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch2g1272 833 NCBIfam HAD-IC family P-type ATPase 604 768 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch2g1272 833 PRINTS P-type cation-transporting ATPase superfamily signature 688 707 - -
Mch2g1272 833 PRINTS P-type cation-transporting ATPase superfamily signature 458 472 - -
Mch2g1272 833 PRINTS P-type cation-transporting ATPase superfamily signature 634 644 - -
Mch2g1272 833 PRINTS P-type cation-transporting ATPase superfamily signature 712 724 - -
Mch2g1272 833 CDD P-type_ATPase_HM 136 790 - -
Mch2g1272 833 Pfam E1-E2 ATPase 261 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1272 Mch-Chr2:8862725 Mch2g1625 Mch-Chr2:13514422 0 dispersed
Mch2g1272 Mch-Chr2:8862725 Mch6g0507 Mch-Chr6:3382907 2.51E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1272 K01534 - mdm:103453726 1137.87