Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1288 ATGCATCCCGATGATCGGCAGGAGCAACCGTTGTTACCGGAAGAAGAAGAAGAAGAAACTGCTTATGATTTGAGGGAGAAGGTTGTGGTTATTGGGATCGACGAATCGGAGGCCGATTCGGGAGTGGGTGTCCCGCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACCGGGCCAGGGTTTTTGATGAGCATAGCGTTTCTGGACCCTGGGAATTTGGAGTCCAATCTTCAGGCGGGTGGGATTGCTGGGTATTCTCTGTTGTGGCTTCTGTTTTGGGCTACGGCCATGGGGCTTCTGATTCAGCTGCTCTCGGCCAGGCTTGGCGTCGCCACTGGCCGGCACTTGGCCGAGCTCTGTAGAGAAGAGTATCCAACTTGGGCCAGAATGGTGCTGTGGGTCATGGCGGAATTGGCCCTCATTGGGGCTGATATACAGGAAGTTATTGGGAGTGCCATTGCCATCAAGATTCTAAGTAATGGTGCTTTGCCTCTCTGGGCTGGAGTCATCATCACTGCTCTAGATTGTTTTATCTTCCTGTTCCTTGAGAATTATGGTGTGAGGAAATTAGAGGCTGTTTTTGCTGTCCTTATTGCCACAATGGCTCTCTCTTTTGCTTGGATGTTTGGGGAAACTAAGCCAAATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCGAAACTTAGCTCCAAGACTATAAAACAGGCTGTTGCTGTTGTTGGATGTATCATTATGCCTCATAATGTGTTTCTGCACTCTGCCCTTGTGCAGTCGCGAGATGTTGATCCGACCAAGCGAGGACGGGTTCGAGAAGCTCTCAGATACTACTCCATTGAGTCCACTCTAGCCCTTCTTGTCTCCTTCATCATCAACTTGTTTGTTACAACTGTGTTTGCTAAAGCTTTCTATGGCACAGACATAGCGAAGAGCATCGGTCTCGTGAACGCAGGCGAATACCTTCAAGATAAATATGGTGGAGGACTTCTCCCCATTTTGTACATCTGGGCTATTGGTTTGTTAGCTGCCGGCCAAAGTAGCACCATTACTGGTACATATGCAGGACAGTTTATCATGGGGGGATTCCTGAACTTGAAGTTGAAAAAATGGCTAAGAGCTTTGATTACTCGAAGCTTTGCAATCGTGCCGACTATGATTGTTGCTCTAGCATTTGAAACTTCCGACTCGATGGTCGACGAATTGAATGAATGGCTCAATGTCCTCCAGTCAATTCAGATCCCTTTTGCTCTCATTCCTCTTCTCTGTTTGGCTTCTAAGGAACGTCTAATGGGCACTTTCAGAATTGGCCCTGTTTTAAAGATATCCTCTTGGCTGGTGGCAGTCTTGGTGATGGCCATTAACGGGTATCTTCTGGTGAGCTTCTTCTCATCGGAAGTGAACGGAGCATTCATCGCCACTTTCATGATCGTCTTCATTGCTGCGTACCTTGCCTTTGTTGTTTACCTCATCTTTCAAAGTATTTCGTTTTCAAGTTGGCATGACTTCATAAGCCGGAAGACTTGCACAGACACTGGGAACTGA 1536 47.46 MHPDDRQEQPLLPEEEEEETAYDLREKVVVIGIDESEADSGVGVPPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGGIAGYSLLWLLFWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARMVLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPNGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVDPTKRGRVREALRYYSIESTLALLVSFIINLFVTTVFAKAFYGTDIAKSIGLVNAGEYLQDKYGGGLLPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALAFETSDSMVDELNEWLNVLQSIQIPFALIPLLCLASKERLMGTFRIGPVLKISSWLVAVLVMAINGYLLVSFFSSEVNGAFIATFMIVFIAAYLAFVVYLIFQSISFSSWHDFISRKTCTDTGN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9019477 9022949 + MC02g1073 Mch2g1288 682210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1288 511 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 50 428 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch2g1288 511 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 32 493 IPR001046 GO:0005384(PANTHER)|GO:0005774(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0042742(PANTHER)|GO:0046873(InterPro)|GO:0055072(PANTHER)|GO:2000379(PANTHER)
Mch2g1288 511 MobiDBLite consensus disorder prediction 1 20 - -
Mch2g1288 511 NCBIfam Nramp family divalent metal transporter 57 427 - -
Mch2g1288 511 Hamap Divalent metal cation transporter MntH [mntH]. 37 460 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch2g1288 511 Pfam Natural resistance-associated macrophage protein-like 73 434 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch2g1288 511 PRINTS Natural resistance-associated macrophage protein signature 161 180 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch2g1288 511 PRINTS Natural resistance-associated macrophage protein signature 404 423 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch2g1288 511 PRINTS Natural resistance-associated macrophage protein signature 342 361 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch2g1288 511 PRINTS Natural resistance-associated macrophage protein signature 186 207 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch2g1288 511 PRINTS Natural resistance-associated macrophage protein signature 235 258 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch2g1288 511 PRINTS Natural resistance-associated macrophage protein signature 131 157 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch2g1288 511 PRINTS Natural resistance-associated macrophage protein signature 370 387 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1288 Mch-Chr2:9019477 Mch8g1067 Mch-Chr8:7546464 1.32E-107 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1288 K21398 - csv:101211711 900.197