Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1291 ATGGGGGTATCATTAATTAAAGTGCTTCTTAGACGTATTTCATCATTTCTTCAACTTTCATCTTCTGACTATGTAAATTTACAACCAACTCTGAAGTACTACCATATAATAGAAGGGGTCTTGAAGCTACTGAGGCCAATACTGGATGCAGTTGTTGATTCAGATATTGCTTCCGATGAAGAGCTTACTAAGGCATTTGAACAACTTGATCATTCAGTGGATGAACTAAGGATGCTCTTTGAAAATTGGCAACTATTGTCGAGTAAAGTATATTTTGTACTGCAAAGTGAAGCACTAATATCAAAAATTGGAAAATCTAGCCTCGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTCCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGCGTCCAAAAAGTTAATCATATTGGAAAGGAACAAATATCTTCCATTATCAAAGATACCATAAGGAATCAAATAGAGGGTATCGGACCCAGCTCAGATGTCTTGGTGAAACTTGCGGATTCCCTGAGCTTGAGATCAAACCAGGAGATTTTAATCGAGGCCGTGGCCCTTGAAAAGTTGAAAGAGAATGCAGAACAAGCTGAAAATACTGGAGAAGCTGAGGACATTGATCAAATGGTTGCTCTTGTAACCCGCATGCATGAACGACTTATAACAATAAAGCAGTCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACAGATCCAGTTATCGTCGCATCAGGGCAGACCTATGAGCGGGTTTTTATAAAAAACTGGATTGATCTGGGGCTCAATGTTTGTCCAAAGACTAGACAGACATTGGCTCACACCAATCTTATACCTAATTTCACTGTTAAGGCTCTAATTGAAAACTGGTGTGAGACGAACAATGTGAAATTGTCTGACCCCGCAAGGTCAGTGAACTTGAACCAGCTCTCACCCCTACTCGTTGGGAACTTTGATTCTGATGCACATCGAGAACCCATTTTTCCTCGTTCCCCTGGCTACCAACTGATGTCTCCTCAATCAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTTGGTGGAACTCATAGAGATGGAAATTCTTCTTTGCTCTCCCATTCTTTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAAGAGGGATTGATTTTAGTAGACTAAGGCTTACAAGTTCAGAAGATCGACCAGGCAAATTGGAAGAGAATGGTTGTGATTTGGTTGCTAAACCATCCATGTCACCATCTAGAACCAATGTTCCAAATACCAGTGAGGATGAACATTCACATAGTCATAATAGGAGCGCATCCACCTCTAGTGCAATCTCAAATGCTAATCTCTCTCGAGAAACTTCAGGGGAAGCCAATGAAGCTTCACAGTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTCGGCTGCCACTACCTCAACTACCAGCCGCAGAGAACCAGAGATTCCAGCTAGACTAGCTGACTCAAGATCTCGGGGTAATACAATTTGGCTCCGGCCATCAGAGAGGTTTGCCACTAGAATAACTGCATCATCTACCACTGAGACGAGGCCAGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTTGAGGAATTGAAGAGCAGTTCACTCGAAACTTTAAGAGGTGCTACAGCTGAATTGCGGCTATTGGCCAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCCATTGTATATTTGGTTGATTTGCTCCTCTCTGCAGACTCGAAGATCCAGGAGAATGCTGTTACAGCACTTCTAAACTTATCCATCAATGATAATAATAAAAGTGCCATTGCTCAGGCCAATGCAATCGAGCCTCTGATTCATGTTCTTAAAACTGGGAGCCCGGAGGCGAAGGAGAACTCGGCGGCCACACTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCGTTGGTTGAATTGTTGGGTAATGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCTTTGTTTAATTTGTCAATATTCCATGAGAACAAGGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACGATTCCTGAGGGTAGGTCTGCGATTGGTCAGGAAGGTGGAATTCCTGTTCTGGTCGAGGTCGTCGAGTTGGGTTCTGCAAGAGGAAAGGAAAATGCGGCAGCAGCATTGTTGCAGCTTTGCACAACAAGCAATAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCGCTAGTGGCGTTGTCACAATCTGGCACTGCTAGAGCCAAAGAAAAGGCCCAAGCACTTCTTAGCCATTTCAGAAGCCAGAGACATGGTAATTCAGGAAGAGGGTAA 2514 43.87 MGVSLIKVLLRRISSFLQLSSSDYVNLQPTLKYYHIIEGVLKLLRPILDAVVDSDIASDEELTKAFEQLDHSVDELRMLFENWQLLSSKVYFVLQSEALISKIGKSSLDIFQLLQSSNENLPEELSSTSLEHCVQKVNHIGKEQISSIIKDTIRNQIEGIGPSSDVLVKLADSLSLRSNQEILIEAVALEKLKENAEQAENTGEAEDIDQMVALVTRMHERLITIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKNWIDLGLNVCPKTRQTLAHTNLIPNFTVKALIENWCETNNVKLSDPARSVNLNQLSPLLVGNFDSDAHREPIFPRSPGYQLMSPQSTRSAGSGKNLNSLGGTHRDGNSSLLSHSFSEDSLSNDAGDERGIDFSRLRLTSSEDRPGKLEENGCDLVAKPSMSPSRTNVPNTSEDEHSHSHNRSASTSSAISNANLSRETSGEANEASQLSTNLTGYGSDAAGESKSEPSAATTSTTSRREPEIPARLADSRSRGNTIWLRPSERFATRITASSTTETRPDLSAIEAQVQKVVEELKSSSLETLRGATAELRLLAKHNMDNRIVIAQCGAIVYLVDLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9063766 9076947 + MC02g1076 Mch2g1291 682213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1291 837 Pfam U-box domain 236 306 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch2g1291 837 SUPERFAMILY RING/U-box 224 312 - -
Mch2g1291 837 MobiDBLite consensus disorder prediction 338 520 - -
Mch2g1291 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 717 758 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 PANTHER U BOX DOMAIN-CONTAINING 30 830 - -
Mch2g1291 837 MobiDBLite consensus disorder prediction 387 417 - -
Mch2g1291 837 Coils Coil 179 209 - -
Mch2g1291 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 594 636 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch2g1291 837 SMART arm_5 788 828 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 SMART arm_5 624 664 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 SMART arm_5 706 745 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 SMART arm_5 583 623 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 SMART arm_5 665 705 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 SMART arm_5 746 786 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 CDD RING-Ubox_PUB 237 289 IPR045210 -
Mch2g1291 837 FunFam RING-type E3 ubiquitin transferase 537 832 - -
Mch2g1291 837 MobiDBLite consensus disorder prediction 448 506 - -
Mch2g1291 837 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch2g1291 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 676 718 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 MobiDBLite consensus disorder prediction 346 386 - -
Mch2g1291 837 Pfam Armadillo/beta-catenin-like repeat 585 622 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 Pfam Armadillo/beta-catenin-like repeat 667 704 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 Pfam Armadillo/beta-catenin-like repeat 624 663 IPR000225 GO:0005515(InterPro)
Mch2g1291 837 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Mch2g1291 837 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Mch2g1291 837 Gene3D - 535 833 IPR011989 -
Mch2g1291 837 SUPERFAMILY ARM repeat 554 826 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1253 Mch-Chr1:14804663 Mch2g1291 Mch-Chr2:9063766 3.95E-29 dispersed
Mch2g1291 Mch-Chr2:9063766 Mch4g2494 Mch-Chr4:25696194 8.56E-24 dispersed
Mch9g0958 Mch-Chr9:7909022 Mch2g1291 Mch-Chr2:9063766 4.65E-76 transposed
Mch9g1807 Mch-Chr9:19881471 Mch2g1291 Mch-Chr2:9063766 1.40E-16 transposed
Mch1g1252 Mch-Chr1:14799183 Mch2g1291 Mch-Chr2:9063766 2.69E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1291 - - - 0.0