Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1301 ATGGCGGACGAGCAGCCGTCGGCAAGTAGTCGGCGGAGGAGCCGAGGATCTGAGGCAGCTACTCGCCTTCAGGCTCTGGAACGTCTAAGAGCCATCCGCAGCGGCGGCCGTCGATCGGAAGCTGGTGGTTTCCAAGTTAAGTTAGAGAACCCCATATACGATACGATTCCCGAAGATGAGTATGAATCTCTCGTTGCAAAACGCCGAGAAGAAGCCCGAGGGTTCATTGTTGACGACGACGGTCTTGGGTATGGAGACGAAGGCGAGGAAGAGGATTGGTCCAAAGCTGGAGTCCATTCCTCCGATGAGTCCGACGGCGAGCTCGAGAAACCTAAAAAGAGGAAAACAGAGAAGAAAGAGGCGCAGCCGAAGAAGCCCTCTTCTTCATTATCGGCGGCGGCGGCTATGATGGGGAAACAAAAGCTTTCTTCGATGTTCACTTCGTCGATCTTCAGGAAAGCGAATAGAGACGATAAGGCTAAAGGGTCGGCTTGTGACAGTATCGTCGATGATGTAATTGCCGAATTTGCGCCGGATGAGACTGACAGAGAGAGGCGTAGAAAGGGGCAGATTGGAGCTATGCCGATTTCGAGGACTTTTGCGCCTATTCCTGCTGTGAAGTGCGAGGGATTAACTGCCCCAAGTCTTAATTTAATCGGTGGATCTGAATTGATTAAGGATACTGAAAATGGGAACTTTGGAATGACCAGGGTTATTACAGATACTGATATGGAGCCTGTGCGAGCTGGTATAGAGGTCCAGGGGAATGGTGAAAGTAGTAAGGGAATTGAGGAAAAGGAGGAGTTAAATGCTCAAATCAGTCAGGATCCGATTGTGCAATCACATAATTCTTTGAAGGAAGATGTAATTGAAGATAATATGCCTATTATGGTTGAAACAAAGGCAGAACCACTATCGAAGCAGGAGCCGGTCTGTACTCTCAATGCTAAGATTAATGAAGAAAACAACCCGGCTTTGAGTGCTACTGTGGGTTGGCAAGCAGTGAGGAGCGAAGGTAGCGAAAATGCTGATTCTGCTGCAGAAATTTCTGAAGAGAAATCAGATTTTGATATTGACACAGATGGCTCTCTGCCTTTCTATATAATCGAGGCGCATGAGGAGCTCTTTGGTGCAAATTCGGGTACTGTATATCTATTTGGCAAGGTCAAAGCTGGAGATATGTACCATAGTTGTTGTGTGGTGGTAAAAAACATGCAAAGATGCGTATATGCTATTCCAAGTGCCTCTTTACTTCATTCGGACGAGATGTTGAACCTTCGAAACGATGCTAAGCAGTCTCAGTTTTCTCCTGCAGATCTGCGTACAAAGTTGCAAGGAGTGACTTCAGGACTAAAAAACGAAATAGCCAATCAGTTATTAGATCTCAATGTTTCAACATTTAGCATGACTCCGGTTAAGAGGAAATATGCATTTGAGCGTTGTGACATACCTGCGGGAGAAAATTATGTGATTAAGATCAATTACCCATTTAAGCACCCCCCACTTCCTGCTGATCTGAAAGGAGAATCATTCTGTGCCCTCTTAGGAACGCATCGCAGTGCCTTAGAGCTCCTCCTCATTAAAAGGAAAATAAAGGGCCCCTCCTGGCTGTCAATTTCAAAATTTTCTTCCTGTACTGGTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGACAGTTGACTCTCCAAAAGATGTTCAACTTTCAACTTCGTCAAGTGTCAAAACTTTGGAGATTCCTTCTCTGATTGTCAGTGCAATAAATATAAAAACCATCATTAATGAAAAGCAGAATGTCAATGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCAAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAAAAACCTGGTATGCTTAAACATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTAATAAGGCTGCATCAAATGTTTTAATCTGCGAGAGCAGTGAAAGGGCCTTGTTGAATCGATTAATGGTTGAATTATTCAAATTGGATAGTGATGTGCTGGTTGGACACAACATCTCTGGATTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGCATGTGGTCCAGAATAGGTCGCCTTAAGCGATCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGAGCAAGTCCAGGAGTCATGTCTTGCATTGCTGGTCGACTATTATGTGATACATACTTGTCTTCCCGTGACCTACTGAAAGAGATTAGTTATTCTTTGACAGAACTAGCAAAGACTCAGCTTAATAAGGATCGCAAGGAGGTTACTCCACATGAGATTCCAAGAATGTTCCAAGCATCAGAGTCTCTCATGGAGCTGATTGAATATGGAGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATCTCAGTGTTCTTCCTCTTACTCGTCAGCTAACTAATATCAGTGGTAATCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAAAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAGTATATTGTCCCCGACAAGACTTTATCTTATATGAAGGAAAAAAAGATCGTAAAAAAGAGAATGACTCGTGGTTCTGAGGAAAAGCATACTGATGAATTTGATTTAGATGATGCAAATGTAGAATTTGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGATCCTCCTATGCAGGTGGGTTAGTCTTGGAGCCAAAACGAGGTTTATATGATAAATATATATTACTCTTGGACTTCAACAGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACCGTAGAAAGACCTCCAGATGGTGTTTTTCCTCGTCTGCCATCTAGTAACATGACTGGAGTTCTTCCCGAGTTGCTAAAAAATTTGGTTCAACGGAGAAGAATGGTAAAGTCATGGATGAAAAATGCATCTGGTCTCAAGCTCCAGCAACTTGACATTCAACAGCAGGCACTAAAGCTTACTGCAAACAGTATGTATGGATGTTTAGGCTTTTCTAATTCAAGGTTTTACGCAAAACCACTAGCAGAGCTCATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATTTTGTACAGAATAATTTGAACCTAGAGGTAATTTACGGGGATACTGATTCAATAATGATCTATAGTGGACTGGATGATATCAGCAAAGCGAAAGCAATTGCAGCAAAAGTTATACAAGAGGTCAACAAAAAATACAAGTGTTTAGAAATTGATCTCGATGGTCTGTACAAGAGAATGCTGCTTCTGAAGAAAAAGAAATATGCAGCTGTAAAGTTGCAGTTCAAGGATGGAATGCCATATGAGGTTATTGAGCGCAAGGGTCTTGATATGGTTCGCCGTGACTGGAGTTTATTATCGAAGGAATTAGGTGATTTCTGCTTGAGTCAAATATTGTCTGGAGGGTCATGTGATGATGTTGTTGAGTCAATACACGACTCTCTTAGGAAGATACAAGATGATATGAGGAAAGGGCAAGTAGCACTTGAGAAATATATCATCACGAAGACATTGACTAAGCCACCTGAAGCCTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCACAAAGGTTAAAACAAATGGGTTATTCTACTGGCTGTTCTGTTGGTGATACGATCCCATATGTAATTTGCTGTGAGCAGGGATCTACTTCTGGTGGTTCTACAGGCATTGCTCAGCGGGCTAGACATCCTGATGAACTTAAAAGAGAAGATGGAAAATGGATGATTGACATCGATTACTACCTATCACAGCAGATACACCCTGTGGTCTCTCGTCTATGTGCCTCGATTCAGGGCACAAGTCCAGAACGATTGGCTGACTGTCTGGGGCTTGATTCATCAAAGTTCCAAATCAAATCAAGTGAAGTTTCCAGCAGTGATGTCTCCTCTTCCCTCGTGTATCAGGGTTGTAAACCACTGGTATTAACTTGCCCCAAGTGTTATTGTATTTTTGAAGTTCCTACTATATTCAGTTCTATATACAAGTCAACATATGGAAAGCAAGAAAGTCCAATTGTTGATGAACCTACAAGAAATTTTTGGAGTAATTTGAAATGTCCAAAATGCGAGGATTTGTTATGGGTCCCTGACGAAGCTAATGCGAGTAGGGGTGGAATGACTCCTGGAATGATTTCCAACCAGGTAAAAATACAAACAGACAAGTTCATTGCAAAGTATTATCATGGCTTAATGATGTGCGACGAGGAAACATGCAAATACTCCACACGTACTGTCAATCTTCGACGTGTGGGCGACTCCCAGAGAGGAATTCCCTGCCCAAAATATCCTCAGTGCGACGGGCGTCTCATAAGAACGTACACTGAAGCGGATTTGTGGAAGCAGATTTGTTATTTTTGTGACGTGTTGGATACTGAACGCTGTATGGAAAAGCTGGAGATTCATACCAGGGTAACTTTAGAAAAAGAAATGGCAAAAATTCGACAATTGGTCGAGTTAGCTGTATCAACAGTTAAAACGATTCGAGATCGTAGCGCATATGGTCATTTGAAGTTGGAGGATATTGCAGTTACAGTTTGA 4629 42.64 MADEQPSASSRRRSRGSEAATRLQALERLRAIRSGGRRSEAGGFQVKLENPIYDTIPEDEYESLVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVHSSDESDGELEKPKKRKTEKKEAQPKKPSSSLSAAAAMMGKQKLSSMFTSSIFRKANRDDKAKGSACDSIVDDVIAEFAPDETDRERRRKGQIGAMPISRTFAPIPAVKCEGLTAPSLNLIGGSELIKDTENGNFGMTRVITDTDMEPVRAGIEVQGNGESSKGIEEKEELNAQISQDPIVQSHNSLKEDVIEDNMPIMVETKAEPLSKQEPVCTLNAKINEENNPALSATVGWQAVRSEGSENADSAAEISEEKSDFDIDTDGSLPFYIIEAHEELFGANSGTVYLFGKVKAGDMYHSCCVVVKNMQRCVYAIPSASLLHSDEMLNLRNDAKQSQFSPADLRTKLQGVTSGLKNEIANQLLDLNVSTFSMTPVKRKYAFERCDIPAGENYVIKINYPFKHPPLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCTGSQRVSWCKFEVTVDSPKDVQLSTSSSVKTLEIPSLIVSAINIKTIINEKQNVNEIVSASVICCQRAKIDGPMLATEWKKPGMLKHFTIIRKLDGGIFPMGFNKAASNVLICESSERALLNRLMVELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSRIGRLKRSVMPKLGKGGSIFGSGASPGVMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHEIPRMFQASESLMELIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKTLSYMKEKKIVKKRMTRGSEEKHTDEFDLDDANVEFAPNTESGKGKKGSSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERPPDGVFPRLPSSNMTGVLPELLKNLVQRRRMVKSWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDFVQNNLNLEVIYGDTDSIMIYSGLDDISKAKAIAAKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCDDVVESIHDSLRKIQDDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYVICCEQGSTSGGSTGIAQRARHPDELKREDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIKSSEVSSSDVSSSLVYQGCKPLVLTCPKCYCIFEVPTIFSSIYKSTYGKQESPIVDEPTRNFWSNLKCPKCEDLLWVPDEANASRGGMTPGMISNQVKIQTDKFIAKYYHGLMMCDEETCKYSTRTVNLRRVGDSQRGIPCPKYPQCDGRLIRTYTEADLWKQICYFCDVLDTERCMEKLEIHTRVTLEKEMAKIRQLVELAVSTVKTIRDRSAYGHLKLEDIAVTV 1542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9157208 9170810 - MC02g1085 Mch2g1301 682223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1301 1542 Gene3D DNA Polymerase alpha, zinc finger 1325 1527 IPR038256 -
Mch2g1301 1542 ProSitePatterns DNA polymerase family B signature. 1061 1069 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Mch2g1301 1542 Gene3D Helix hairpin bin 976 1019 - -
Mch2g1301 1542 CDD POLBc_alpha 906 1309 IPR045846 GO:0003887(InterPro)|GO:1902975(InterPro)
Mch2g1301 1542 FunFam DNA polymerase 1137 1323 - -
Mch2g1301 1542 Pfam DNA polymerase family B 832 1294 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Mch2g1301 1542 Pfam DNA Polymerase alpha zinc finger 1325 1538 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
Mch2g1301 1542 SMART polmehr3 580 1073 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch2g1301 1542 PRINTS DNA-directed DNA-polymerase family B signature 1059 1067 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch2g1301 1542 PRINTS DNA-directed DNA-polymerase family B signature 930 943 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch2g1301 1542 PRINTS DNA-directed DNA-polymerase family B signature 1006 1018 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch2g1301 1542 SUPERFAMILY Ribonuclease H-like 361 860 IPR012337 -
Mch2g1301 1542 Pfam DNA polymerase family B, exonuclease domain 519 766 IPR006133 -
Mch2g1301 1542 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Mch2g1301 1542 Gene3D Palm domain of DNA polymerase 900 1123 IPR023211 -
Mch2g1301 1542 MobiDBLite consensus disorder prediction 88 124 - -
Mch2g1301 1542 FunFam DNA polymerase 971 1020 - -
Mch2g1301 1542 Gene3D - 366 565 - -
Mch2g1301 1542 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 14 1540 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
Mch2g1301 1542 Gene3D - 1137 1322 IPR042087 -
Mch2g1301 1542 FunFam DNA polymerase 406 532 - -
Mch2g1301 1542 Gene3D - 406 532 - -
Mch2g1301 1542 CDD DNA_polB_alpha_exo 580 823 - -
Mch2g1301 1542 NCBIfam DNA polymerase (pol2) 51 1291 - -
Mch2g1301 1542 MobiDBLite consensus disorder prediction 1 22 - -
Mch2g1301 1542 MobiDBLite consensus disorder prediction 76 136 - -
Mch2g1301 1542 Gene3D - 580 888 IPR036397 GO:0003676(InterPro)
Mch2g1301 1542 SUPERFAMILY DNA/RNA polymerases 856 1309 IPR043502 -
Mch2g1301 1542 FunFam DNA polymerase 580 886 - -
Mch2g1301 1542 MobiDBLite consensus disorder prediction 1 18 - -
Mch2g1301 1542 Coils Coil 1087 1107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1301 Mch-Chr2:9157208 Mch7g0712 Mch-Chr7:11785867 3.94E-286 dispersed
Mch2g1301 Mch-Chr2:9157208 Mch2g1302 Mch-Chr2:9173321 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1301 K02320 - csv:101211201 2447.93