Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1302 TCGCCGTCGAGGTCAATGATGGGGAAACGAAAGCTTTCTTCGATGTTCACTTCGTCGATCTTCAGGAAAACGAGTAGAGACGATAAGGCTAAAGGTTCAGCTTGTGACAGTATCGTCGATGATGTAATTGCCGAATTTGCGCCGGATGAGACTGACAGAGAGAAGCGTAGAAAGGGAAGAATCGGAGCTATGCCGAGGACTTGTGCGCCTATTCCTGCTGTGAAGTGCGAGGGATTAACTGCGCCGAGTCTTAATTTGATCGGTGGATATGAATTGATTAAGGATACTGCAAATGGGAACTTTGAGGACATGCAGGATTTAGATTTTCAAATAAGTCTGGATCCGATTGTGAAATCACATAGTTTTTCGATTAAGGAAGATGTAATTGAAGATAATATGCCTATTATGGTTGAAACATAGGCGGAATCATTATTGAAGAAGGAGCCGGTTTGTGCGCTGAATGCTAAGATTAATGAAGAAAACAACCCGGCTTTGAGTGCTGCTGCGGGTTGGCGAGCAGTGAGGAGCGAAGGGAGCGAAAATGTTGATTCTGCTGGAGAAATTTCTGAAGAGAAATTCAATATTGATATTGACACAGACGGCTCTCTTCCTTTCTATATAATCGATGCGTATGAGGAGCTCTTCGGTGCGAATTCGGGCACTGTATATCTATTTGGCAAGGTCAAAGCTGGAGATACGTACCATAGTTGTTGTGTGGTGGTAAAAAACATGCAAAGATGTGTATATGCTATTCCAATTGCCTCTTTTCTTCATTCGGATGAGGTGTTGAACCTTCAAAATGATGCTGAACACTCCCATCTTTCTCCTGCAGATCTGCATACAAAGTTGCAAGAAGTGACCACTAGACTAAAAAACGAAATAGCTAAGCAGTTACTAGATCTCAATGTTTCAACATTTAGCATGACTCCAGTTAAGAGGAAATATGCATTTGAGCGTCGTGACATACCTGCGAGAGAAAATTATGTGATTAAGATCAGTTACCCATTTAAGCATCCCCCACTTCCTACTGATCTAAAAGGAGAATCATTTTGTGCCCTCTTAGGAACGCATCGCAGTGCCTTGGAGCTTCTCCTCATTAAAAGGAAAATAAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTTTCTTCCTGTCCTGATTCTCAACAAGTGAGCTGGTGCAAGTTTGAGGTGACAGTTTACTCTCCAAAAAATGTTCAAATTTCAACTTCGTCAAGTAAAACTTTGGAGGTTCCTTCTATGATTGTCAGTGCAATAAATATAAAGACCATCATTAATGAAAATCAGAATGTCAATGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCAAAGATTGACGGTCCCATGCCGGCCACAGAATGGAAAAAACCTGGTATGCTTAGACATTTTACTATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTAAGAAGGCTGGATCAAATGTTTTAATCTGCGAGAGTGAAAGGGCCTTGTTGGATGAATTAATGAGTAAATTATACAAATTGGATAGTGATGTGCTGGTTGGACACAATATCTCTGGATTTGACATAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGCACGTGGTCCAAAATAGGTCACCTTAAGCGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGAGCAAGTTCAGGAGTCATGGCTTGCATTGCTGGTCGACTTTTATGTGATACATACTTATCTTCCCGTGACCTATTGAAAGAGATTAGCTATTCTTTGATAGAGCTATCAAAGACTCAGCTTAATAAGGACCGTAAGGAGGTTACTCCACATGATATTCCAAGAATGTTCCAAGCATCAGAGTCTCTCATGGACCTGATTGAATATGGCGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATCTAAATGTTCTTCCTCTAACTCGTCAGCTGACTAATATCAGTGGTAATCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAGTATATTGTTCCCGACAAGACTTCATCTTATATGAAGGAAAAAAAGATGGTAAAAAAGAGAAGGGTTCATGGTTATGAGGAAAAACATGTTTATGAATTTGATTTAGATTATGTAAATGTAGAATTTGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGATCCTCCTATGCAGGTGGGCTAGTCTTGGAGCCAAAACGAGGTTTATATGATAAATATATATTACTTCTGGACTTCAATAGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTAGAAAGATCTCCAGATGGTCTTTTTCCTCGTCTGCCATCTAGTAAAATGACTGGAGTTCTTCCCGAGTTGCTAAAAAATCTGGTTCAAAGGAGAAAAACGGTAAAGTCATGGATGAAAAAAGCATCTGGTCTCAAGCTCCAGCAACTTAACATTCAGCAACAGGCACTGAAGCTTACTGCAAACAGTATGTATGGATGTCTAGGGTTTCCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACCGTTGATCTTGTTCAGAATAAGTTTAACCTAGAGGTAATTTATGGCGATACTGATTCAATAATGATCCATAGTGGACTGGATGATATTGGCAACGCGAAAGCAATTGCAGCGAAAGTTATACATGAGGTCAACAAAAAATACAAGTGTTTAGAAATTGATCACGATGGTCTGTACAAGAGAATGCTACTTCTGAAGAAAAAGAAATATGCAGCTGTAAAGTTGCAGTTGAAGGATGGAATGCCATATGAGGTTATTGAGCGAAAGGGTCTTGATATGGTTCATCGTGATTGGAGTTTATTATCAAAGGAATTAGGTGATTTCTGCTTGAGTCAAATATTGTCTGGAGGGTCATGTGATGATGTTATTGAGTCAATACACGACTCTCTTAGGAAGATACAAGATGATATGAGGAAAGGGCAAGTAGCACTTGAGAAATATATCATCACGAAGACATTAACCAAGCCACCTGAAGCCTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCACAAAGGTTAAAACAAATGGGTTATTCTACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTTCTGTGAGCAGGGATCTACTTCTGGTGGTTTTACAGGCATTGCTCAGCGGGCTAGACATCCTGATGAACTTAAAAGAGAAGATGGAAAATGGATGATTGACATCGATTACTACCTGTCGCAGCAGATTCATCCTGTGGTCTCTCGTCTGTGTGCCTCAATTCAGGGCACAAGTCCAGAACGATTGGCTGACTGTCTGGGGCTTGATTCATCAAAGTTCCTAATCAAATCAAGTGAAGTTTCCAACAGTGATGTCTCCTCTTCCCTCCTGTATCAGAGCTGTAAACCACTGGTACTAACTTGCCCCAAGTGTTATGGTATTTTTGAAGTTCCTACTATATTCAGTTCTATATACAAGTCAACATATGGAAAGCAAGAAAGTCCAATGGTTGATGAACCTACAAAATTTTTGAAATGTCCAAAATGCGAGGATTTGTTATGGGTTCCTGACGAAGCTAATGAGGGTAGGGGTGGAATGACTCCTGAAATGATTTCCAGCCAGGTAAAAATGCAAACAGACAAGTTCATTGCAAAGTATTATCATGGCTTAATGATGTGTGACAAGGAAACCTGCAAATACACCACTCGTGCTGTCAATCTTCGACGTGTGAGCGACTCCCAGAGAGGAATTCTCTGCCCAAAATATCCTCAGTGCGATGGGCGTCTCATAAGAACGTATACTGAAGCGGATTTGTGGAAGCAGATTTGTTATTTTTATTATGTGTTGGATACTGAATGCTGTATGGAAAAGTTGGAGATTCGTACAAGGGTAACTTTAGAAAAAGAAATGGCAAAAATTCGGCCATTGGTCGAATCAGCTGCATCAACAATTAAAAGGATTCGAGATCTCAATGCATATGGTCGGGTGAAGTTGGAAGATATTGCGGTTAGTTTG 4125 40.58 SPSRSMMGKRKLSSMFTSSIFRKTSRDDKAKGSACDSIVDDVIAEFAPDETDREKRRKGRIGAMPRTCAPIPAVKCEGLTAPSLNLIGGYELIKDTANGNFEDMQDLDFQISLDPIVKSHSFSIKEDVIEDNMPIMVETAESLLKKEPVCALNAKINEENNPALSAAAGWRAVRSEGSENVDSAGEISEEKFNIDIDTDGSLPFYIIDAYEELFGANSGTVYLFGKVKAGDTYHSCCVVVKNMQRCVYAIPIASFLHSDEVLNLQNDAEHSHLSPADLHTKLQEVTTRLKNEIAKQLLDLNVSTFSMTPVKRKYAFERRDIPARENYVIKISYPFKHPPLPTDLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPDSQQVSWCKFEVTVYSPKNVQISTSSSKTLEVPSMIVSAINIKTIINENQNVNEIVSASVICCQRAKIDGPMPATEWKKPGMLRHFTIIRKLDGGIFPMGFKKAGSNVLICESERALLDELMSKLYKLDSDVLVGHNISGFDIDVLLHRAQFCRVPSSTWSKIGHLKRSVMPKLGKGGSIFGSGASSGVMACIAGRLLCDTYLSSRDLLKEISYSLIELSKTQLNKDRKEVTPHDIPRMFQASESLMDLIEYGETDAWLSLELMFHLNVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKTSSYMKEKKMVKKRRVHGYEEKHVYEFDLDYVNVEFAPNTESGKGKKGSSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSPDGLFPRLPSSKMTGVLPELLKNLVQRRKTVKSWMKKASGLKLQQLNIQQQALKLTANSMYGCLGFPNSRFYAKPLAELITSQGREILQSTVDLVQNKFNLEVIYGDTDSIMIHSGLDDIGNAKAIAAKVIHEVNKKYKCLEIDHDGLYKRMLLLKKKKYAAVKLQLKDGMPYEVIERKGLDMVHRDWSLLSKELGDFCLSQILSGGSCDDVIESIHDSLRKIQDDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIIFCEQGSTSGGFTGIAQRARHPDELKREDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFLIKSSEVSNSDVSSSLLYQSCKPLVLTCPKCYGIFEVPTIFSSIYKSTYGKQESPMVDEPTKFLKCPKCEDLLWVPDEANEGRGGMTPEMISSQVKMQTDKFIAKYYHGLMMCDKETCKYTTRAVNLRRVSDSQRGILCPKYPQCDGRLIRTYTEADLWKQICYFYYVLDTECCMEKLEIRTRVTLEKEMAKIRPLVESAASTIKRIRDLNAYGRVKLEDIAVSL 1374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9173321 9191163 - MC02g1086 Mch2g1302 682224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1302 1374 CDD POLBc_alpha 742 1145 IPR045846 GO:0003887(InterPro)|GO:1902975(InterPro)
Mch2g1302 1374 Gene3D DNA Polymerase alpha, zinc finger 1161 1358 IPR038256 -
Mch2g1302 1374 Gene3D Palm domain of DNA polymerase 748 953 IPR023211 -
Mch2g1302 1374 FunFam DNA polymerase 807 856 - -
Mch2g1302 1374 NCBIfam DNA polymerase (pol2) 188 1127 - -
Mch2g1302 1374 SUPERFAMILY Ribonuclease H-like 199 696 IPR012337 -
Mch2g1302 1374 Gene3D - 417 723 IPR036397 GO:0003676(InterPro)
Mch2g1302 1374 SMART polmehr3 417 909 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch2g1302 1374 Gene3D Helix hairpin bin 807 858 - -
Mch2g1302 1374 Pfam DNA Polymerase alpha zinc finger 1161 1370 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
Mch2g1302 1374 Gene3D - 244 370 - -
Mch2g1302 1374 Pfam DNA polymerase family B, exonuclease domain 357 602 IPR006133 -
Mch2g1302 1374 Gene3D - 973 1159 IPR042087 -
Mch2g1302 1374 FunFam DNA polymerase 973 1159 - -
Mch2g1302 1374 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 138 1372 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
Mch2g1302 1374 Gene3D - 204 403 - -
Mch2g1302 1374 ProSitePatterns DNA polymerase family B signature. 897 905 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Mch2g1302 1374 FunFam DNA polymerase 417 722 - -
Mch2g1302 1374 Pfam DNA polymerase family B 668 1130 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Mch2g1302 1374 SUPERFAMILY DNA/RNA polymerases 692 1145 IPR043502 -
Mch2g1302 1374 CDD DNA_polB_alpha_exo 417 659 - -
Mch2g1302 1374 PRINTS DNA-directed DNA-polymerase family B signature 766 779 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch2g1302 1374 PRINTS DNA-directed DNA-polymerase family B signature 895 903 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Mch2g1302 1374 PRINTS DNA-directed DNA-polymerase family B signature 842 854 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1302 Mch-Chr2:9173321 Mch7g0712 Mch-Chr7:11785867 9.55E-273 dispersed
Mch2g1301 Mch-Chr2:9157208 Mch2g1302 Mch-Chr2:9173321 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1302 K02320 - csv:101211201 2101.25