Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch2g1304 | ATGGAGTTGGAATGGGTTCGAGGGGAAGAACTGGGCCGCGGCAATTTCGCGACGATCAATTTAGCAATACCCACAAAGGGGTTCGATCAGTTTCCCCCATTAATGGCGGTCAAGTCCTCTGTAGCTGCATCCTCTGTTTCCGTTTCGCTGAAGAACGAGAAGCAAATTTTGGACCGAATTGGGAATTGCCCACAAATCGTTTCTTGTTTTGGCGATGGATTCACCATTGAAAGAGATGGGGAGAAGTATTATAATGTGTTGTTGGAGTACGCCAATGGCGGAAGTCTTGCTGATTCTGTCAAAATCCACGGCGGCGGGCTGCCGGAATTCGATGTTAGAAGATACACGGCGGCGATTCTTCGGGGGCTCCGGCATGTTCACGGCAATGGGTTTGTTCACTGCGATTTGAAGCTTGCGAATGTGTTGAATTTTGGCAATGGCGATGTGAAGATTGCTGATTTTGGGCTTGCCAAAGTGGCCGGAAAGAAGACGGCAGCGGAAACAGAGCAGAGGTTTGAATGGAGAGGGACTCCGATGTCTATGTCGCCGGAGACTGTGACCGGCGGCGAGTATGAACCGCCGTGTGATATTTGGGCGCTGGGTTGCGCGGTCGTGGAGATGGTGGCCGGGAAACCGGCGTGGAATGTTCGGCCGGAAACCGACATTTTCGGGCTGATGATGAGAATAGGAGTTGGAGACGAAGTTCCGGAACTGCCGGAAAATTTGTCCGACGAGGGGAGAGATTTTCTCCGGCGGTGTTTCGTAAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTCTGAATCACCCATTTGTCGCCGGCATTACTGTTACATTAAAGGAGGCCGAACCACCGATGGAGTCGCCGACCGGTCCTTTCGATTTCCCGGAATCGTTGCCGACGTGTTCCGATCAACCTTCCGATGATTCCTATTTTTGTTCTTCTACTGTCTCGCCGGAGACGATGAGTAGGCTGCGGCGGCTGGTGACCGAGAAGCCTTTGGATTGGTCTGTTTCGGATAGTTGGGTCACAGTTAGGTGA | 1044 | 52.3 | MELEWVRGEELGRGNFATINLAIPTKGFDQFPPLMAVKSSVAASSVSVSLKNEKQILDRIGNCPQIVSCFGDGFTIERDGEKYYNVLLEYANGGSLADSVKIHGGGLPEFDVRRYTAAILRGLRHVHGNGFVHCDLKLANVLNFGNGDVKIADFGLAKVAGKKTAAETEQRFEWRGTPMSMSPETVTGGEYEPPCDIWALGCAVVEMVAGKPAWNVRPETDIFGLMMRIGVGDEVPELPENLSDEGRDFLRRCFVKDPRKRWTAEMLLNHPFVAGITVTLKEAEPPMESPTGPFDFPESLPTCSDQPSDDSYFCSSTVSPETMSRLRRLVTEKPLDWSVSDSWVTVR | 347 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 9192605 | 9193648 | - | MC02g_new0217 | Mch2g1304 | 682226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch2g1304 | 347 | Pfam | Protein kinase domain | 7 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch2g1304 | 347 | ProSitePatterns | Protein kinases ATP-binding region signature. | 11 | 38 | IPR017441 | GO:0005524(InterPro) | |
| Mch2g1304 | 347 | Gene3D | Transferase(Phosphotransferase) domain 1 | 98 | 291 | - | - | |
| Mch2g1304 | 347 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 3 | 274 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
| Mch2g1304 | 347 | ProSiteProfiles | Protein kinase domain profile. | 5 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch2g1304 | 347 | SUPERFAMILY | Protein kinase-like (PK-like) | 5 | 316 | IPR011009 | - | |
| Mch2g1304 | 347 | SMART | serkin_6 | 5 | 273 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch2g1304 | 347 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 97 | - | - | |
| Mch2g1304 | 347 | CDD | STKc_MAPKKK | 4 | 273 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1217 | Mch-Chr1:14525626 | Mch2g1304 | Mch-Chr2:9192605 | 2.27E-144 | dispersed | |
| Mch2g1304 | Mch-Chr2:9192605 | Mch9g0834 | Mch-Chr9:6299304 | 4.49E-68 | dispersed | |
| Mch2g1304 | Mch-Chr2:9192605 | Mch2g1305 | Mch-Chr2:9196820 | 7.55E-190 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 77227 | PF00069 | Pkinase | 7.90E-48 | CL0016 | Mch | PK |
Pathway information