Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1310 ATGTGCGTCTACATTAAACAGGTTAAGATGGAAACTAAACTTGATGATCTCAAGATACCTCTAAATCCAACGACCCTCAATAATGAAAACAGAGCAGTGGAAATCATAGACGCCGGAGGTTTCCCCGCCGACGAGTTTCTACAAGACGTTGAAATATGTCGCCTAAAAATCAGAAGTATGACCTTCAGAGCCAACGCCCAATCTCTTCAAAATGCCCTAACCACGGTCCACGGCGTAAAAAGAACAGTAATCGCTCCCGAAATCGAAGAAGCCACAGTCCATTTCGATCCAAACTCGACCAACGAAGAGCAAATCATCGAAGCAATCAGTGGTTCCGGCTTCGAGGTCGAGCTCCTCACCTTCGCAGACAATCCCTACAAAGTTCACATTAAGCTCGAACGAGTTAGTTTTGAAGACATGGCCGCCATTAGATCCTCTCTGGAGCAAGCCTGTGGTGTGAATTTTGTTGAAATGGACGTGGTTGGGCAGAAGGTAGCCATCGGTTATGACCCTGACCAGACTGGTCCGAGGTCTCTTTTGCAGTGCCTGAAGAGTTATAGGGCAAGCTTGTATGTTCCTCCGAGAAGAAGAGATGTGCAGCAGCTTCAAGAAGTTTGTACTTATAGGAATTTGTTCTTGCTGAGCTGCTTGTTTTCAGTTCCAGTGGTGGCTTTTGCAATGGTGCTTCCTATGCTTCCTCCTTATGGGGACTGGTTGAATTATAGGGCTTACAATATGCTTACTGTTGGAATGGTTCTTAGATGGATCTTCTGCACACCAGTCCAGTTCATTGCTGGTCGGAGATTTTATGTAGGATCATACCATGCATTACGGCAGAAATCTGCAAATATGGATGTTCTGGTGGCCCTAGGCACCAATGCTGCTTACTTTTACTCAGTATACATATTATTTAAAGCATTCACTTCCACCTCTTTTAGAGGGCAAGATTTCTTTGAAACTAGCTCCATGTTGATATCCTTCATTCTACTTGGAAAATATTTGGAGGTCATGGCCAAAGGGAAAACATCAGATGCTTTGGCAAAGCTTGCTCATCTTGCTCCTGATACAGCTTGTTTGATGACCTTGAATGATCATGGAAATGTTCTATCAGAGATGGAGATTGATACGCAGCTGATACAGAGAAATGATATAGTTAAGATTGTTCCTGGAGCTAAAGTTCCTGTTGACGGGATTGTTATTAGTGGTCAAAGCCATGTGAATGAGAGTACAATCACTGGAGAAGCAAAATCCATCCTGAAAACACCTGGTGACAAGGTTATTGGCGGGACTGTCAATGAGAATGGATGCTTATTTGTTAAGACCACTCATGTTGGTTTAGATACTACACTTTCTCGAATTGTTCAACTCGTAGAATCAGCTCAGCTATCTCGAGCACCAGCTCAAAAGCTAGCAGATCGGATATCAAAATTTTTTGTTCCTGTTGTTGTTGTGGCAGCATCTGTGACATGGCTTGGATGGTTATTCTGGGGAGAGGCTGGTTTATACCCCAAATATTGGATTCCAAAAGGCATGGATGAGTTTGAACTTGCCCTGCAGTTTGGAATTTCAGTGCTGGTGATTGCATGCCCATGTGCCCTTGGTTTAGCAACGCCAACTGCAATCATGGTTGCATCAGGGAAGGGTGCTTCTCTAGGTGTGCTCATCAAGGGAGCAAGTGCGCTTCAAAATGCATACAAGGTGAAAACGGTAGTTTTTGACAAGACCGGAACCCTAACAGTTGGCAGGCCAGAGGTAGTTAGTGTTGTGCTTTTTTCTACGTTTCCAATGGAGGTGCTCTGTGATGTAGCAATAGCAGTAGAGTCAAACAGTGAACATCCTTTAGCAAAATCTGTAGTGGAGCATGCAAAGAAAATGAGGAAGAAGTTTGGTTCCCGAACCGAACGTCTCAAGCGTGTTGAGAACTTCGAGGTGTTCCCGGGAGCAGGGGTTGGTGGAAAAGTTGACAAAATTCCAGTTTTAGTAGGAAACAGAAGGCTCTTACAAGCTCACAACATTGCTGTTGGTCCTCAAGTTGATCGCTATGTTGTAGAAAATGAGCGGCTGGCTCAAACGTGTATCTTAGTTGCTATTAATGGCAGGGTAGCTGGAGGTTTTGGTGTTACAGATCCACCAAAACCTGGGACTAGAGCTGTCATATCATATCTTCGTTCAATCGGCATCACGAGCATAATGGTCACTGGCGATAACTGGGCCACGGCGTTTGCCGTTGCAAGAGGGGTTGGGATTAACGAGGTCTTTGCAGAGATGGATCCAACGGGAAAAGCTAACAAGATAAAAACCTTAAAGATGACAGGGAATATTGTGGCAATGGTGGGAGATGGAGTAAATGACTCACATGCTTTAGCAGCAGCTGATGTTGGCATTGCAATTGGCGCTGGAACAAATATTGCCATAGAAGCAGCTGATATAGTTCTCATGCGAAGCAATTTGGAAGATGTTGTTACAGCCATAGATCTCTCAAGACAAACAGTTTATCGTATATGGCTTAACTACATCTGGGCACTTGGCTATAACATTATAGGTATGCCTATTGCTGCCGGAATCTTATATCCCTTCATCGGAATCCGGCTGCCGCCATGGCTCGCCGGTGCTTGCATGGCTGCTTCTTCCGTTAGCGTTGTATGTTCTTCTCTCGTCCTGAAATGCTATAAGAGACCCTTAAATTTTCAATCTACTTGA 2700 44.41 MCVYIKQVKMETKLDDLKIPLNPTTLNNENRAVEIIDAGGFPADEFLQDVEICRLKIRSMTFRANAQSLQNALTTVHGVKRTVIAPEIEEATVHFDPNSTNEEQIIEAISGSGFEVELLTFADNPYKVHIKLERVSFEDMAAIRSSLEQACGVNFVEMDVVGQKVAIGYDPDQTGPRSLLQCLKSYRASLYVPPRRRDVQQLQEVCTYRNLFLLSCLFSVPVVAFAMVLPMLPPYGDWLNYRAYNMLTVGMVLRWIFCTPVQFIAGRRFYVGSYHALRQKSANMDVLVALGTNAAYFYSVYILFKAFTSTSFRGQDFFETSSMLISFILLGKYLEVMAKGKTSDALAKLAHLAPDTACLMTLNDHGNVLSEMEIDTQLIQRNDIVKIVPGAKVPVDGIVISGQSHVNESTITGEAKSILKTPGDKVIGGTVNENGCLFVKTTHVGLDTTLSRIVQLVESAQLSRAPAQKLADRISKFFVPVVVVAASVTWLGWLFWGEAGLYPKYWIPKGMDEFELALQFGISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKTVVFDKTGTLTVGRPEVVSVVLFSTFPMEVLCDVAIAVESNSEHPLAKSVVEHAKKMRKKFGSRTERLKRVENFEVFPGAGVGGKVDKIPVLVGNRRLLQAHNIAVGPQVDRYVVENERLAQTCILVAINGRVAGGFGVTDPPKPGTRAVISYLRSIGITSIMVTGDNWATAFAVARGVGINEVFAEMDPTGKANKIKTLKMTGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFIGIRLPPWLAGACMAASSVSVVCSSLVLKCYKRPLNFQST 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9270897 9287365 - MC02g1091 Mch2g1310 682232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1310 899 Gene3D - 339 461 - -
Mch2g1310 899 ProSiteProfiles Heavy-metal-associated domain profile. 51 117 IPR006121 GO:0046872(InterPro)
Mch2g1310 899 SUPERFAMILY HMA, heavy metal-associated domain 49 120 IPR036163 GO:0046872(InterPro)
Mch2g1310 899 PRINTS Copper-transporting ATPase 1 signature 267 292 - -
Mch2g1310 899 PRINTS Copper-transporting ATPase 1 signature 212 233 - -
Mch2g1310 899 PRINTS Copper-transporting ATPase 1 signature 149 170 - -
Mch2g1310 899 PRINTS Copper-transporting ATPase 1 signature 78 101 - -
Mch2g1310 899 PRINTS Copper-transporting ATPase 1 signature 247 267 - -
Mch2g1310 899 CDD P-type_ATPase_Cu-like 212 874 - -
Mch2g1310 899 FunFam Probable copper-transporting ATPase HMA5 701 835 - -
Mch2g1310 899 Pfam E1-E2 ATPase 370 549 - -
Mch2g1310 899 NCBIfam HAD-IC family P-type ATPase 324 855 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch2g1310 899 ProSitePatterns E1-E2 ATPases phosphorylation site. 573 579 IPR018303 -
Mch2g1310 899 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 25 895 - -
Mch2g1310 899 Gene3D - 563 828 IPR023214 -
Mch2g1310 899 PRINTS P-type cation-transporting ATPase superfamily signature 778 797 - -
Mch2g1310 899 PRINTS P-type cation-transporting ATPase superfamily signature 703 714 - -
Mch2g1310 899 PRINTS P-type cation-transporting ATPase superfamily signature 725 735 - -
Mch2g1310 899 PRINTS P-type cation-transporting ATPase superfamily signature 801 813 - -
Mch2g1310 899 PRINTS P-type cation-transporting ATPase superfamily signature 407 421 - -
Mch2g1310 899 PRINTS P-type cation-transporting ATPase superfamily signature 571 585 - -
Mch2g1310 899 SUPERFAMILY Calcium ATPase, transmembrane domain M 316 565 IPR023298 -
Mch2g1310 899 SUPERFAMILY HAD-like 569 884 IPR036412 -
Mch2g1310 899 Pfam haloacid dehalogenase-like hydrolase 567 792 - -
Mch2g1310 899 SFLD Haloacid Dehalogenase 553 830 - -
Mch2g1310 899 CDD HMA 55 117 IPR006121 GO:0046872(InterPro)
Mch2g1310 899 SFLD p-type atpase 553 830 IPR044492 -
Mch2g1310 899 FunFam Copper-transporting ATPase 1, putative 339 461 - -
Mch2g1310 899 Gene3D - 51 121 - -
Mch2g1310 899 NCBIfam heavy metal translocating P-type ATPase 284 887 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Mch2g1310 899 Gene3D - 582 711 IPR023299 GO:0000166(InterPro)
Mch2g1310 899 SUPERFAMILY Calcium ATPase, transduction domain A 371 457 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1310 Mch-Chr2:9270897 Mch8g2630 Mch-Chr8:29545688 2.66E-72 dispersed
Mch10g0339 Mch-Chr10:2250213 Mch2g1310 Mch-Chr2:9270897 1.66E-107 transposed
Mch11g0455 Mch-Chr11:2842141 Mch2g1310 Mch-Chr2:9270897 3.23E-99 transposed
Mch1g0531 Mch-Chr1:9587324 Mch2g1310 Mch-Chr2:9270897 2.46e-311 transposed
Mch1g2141 Mch-Chr1:20620979 Mch2g1310 Mch-Chr2:9270897 5.10E-232 transposed
Mch2g0132 Mch-Chr2:1008161 Mch2g1310 Mch-Chr2:9270897 0 transposed
Mch6g2674 Mch-Chr6:28440276 Mch2g1310 Mch-Chr2:9270897 2.35E-303 transposed
Mch1g1291 Mch-Chr1:15068526 Mch2g1310 Mch-Chr2:9270897 2.18E-17 wgd
Mch11g0362 Mch-Chr11:2235763 Mch2g1310 Mch-Chr2:9270897 3.25E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1310 K17686 - csv:101214276 1357.04