Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1314 ATGTGGGATCTCAATGATTCTCCCGATCATGGAGGAACTGATGAATTTGATGGGCATTCGTCTCCGAAGACATCGATTGAAGGCGATGATGACAGAGCGAAATGGGTGGCGTCGATTTCCAACTCGAGCTCTTCGGCGGTGGTAATGGAAGATGGATCCGACGCCGATGAGGCCAGTGCCGGCGAGGGGGAACCGCTTGTCCATCGGAATGACTTCCCGCCGGCGACCCGGCAGTTCTTCCCTCTGGAGGATTCTAATGTCGGGGCGGCCTCATCGGTTGGTGGCGGCGGTTCTGCTGTGTTCCCTCGAGCTCGGTGGGTGGGAGTGAAGTTCTGCCAGACGGAGCCTCTCGCCGCCGTGAAACCGGTGGCTATTCTGCACCCAATAAAGAAAAGCCGGCGAGGGCCCCGGTCCCGGAGCTCTCAGTACCGCGGCGTCACGTTCTACCGGCGAACTGGCCGGTGGGAATCCCACATATGGGACTGTGGCAAACAAGTCTATCTGGGAGGATTTGATACTGCTCATGCTGCTGCTCGAGCCTATGACAGGGCGGCTATAAAGTTTCGAGGAACAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAAGATTTGAAGCAGATGGGGAGTTTGACTAAGGAAGAATTTGTACATGTTCTACGGAGACAGAGCACGGGTTATCCGAGAGGAAGCTCGAAATTCCGAGGTGTGACCCTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCCGAGATTGAAGCTGCGAGATTACATGATTATGATCTTGTAAATGATACCCTTTGTTTTAGAGCTTATGACAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGAATGAGCCGAGTCCAACAGAATCATCATCAGGAAATGTCTTGGAACAGAATCTTGATTTGAAGTTAGGGAATTCAAGCTCAAAACAAGACAATCTTACATTTGGGAATCATTGCCAAAATGGCACCAAAACTATTGATTTGCAAAATAAAGAATCCAATCCTCTGGAATCAAATATACTTGAGAATGATAATGGTAGAAGGTATAGGTTCCTTGAGATGGATAAAATGCAGTCCCCTAGCCAAACAAATCTCCGATCTCCACCCTCCATCGAGACGACGAGCCATGGGCACTTCGAGAGACCTATGGAATCACAGACTCTTCACAATTACTCTCCACACATCAATCAATCAAACTCTCAAATTCAGTTGTTAAGTAGCAGCAATGAAGGAGGGGTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCGATCTGGTGGCTCTCAACAATTTGCAATTGCAACTGCTGCAGCATCATCAGGATTCCCACAACTTCCACTTTCATCTTCCCAAAATTGGCTGCAGAAAAATGGATGTTTCTTAGAGAGACCCTCTTGA 1503 47.97 MWDLNDSPDHGGTDEFDGHSSPKTSIEGDDDRAKWVASISNSSSSAVVMEDGSDADEASAGEGEPLVHRNDFPPATRQFFPLEDSNVGAASSVGGGGSAVFPRARWVGVKFCQTEPLAAVKPVAILHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGTEADINFSIEDYEEDLKQMGSLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARLHDYDLVNDTLCFRAYDKAAIKCNGKEAVTNFDPSIYENEPSPTESSSGNVLEQNLDLKLGNSSSKQDNLTFGNHCQNGTKTIDLQNKESNPLESNILENDNGRRYRFLEMDKMQSPSQTNLRSPPSIETTSHGHFERPMESQTLHNYSPHINQSNSQIQLLSSSNEGGVGSDELSLCLSEGHQWQRSGGSQQFAIATAAASSGFPQLPLSSSQNWLQKNGCFLERPS 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9321250 9325294 - MC02g1095 Mch2g1314 682236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1314 500 FunFam AP2-like ethylene-responsive transcription factor 141 200 - -
Mch2g1314 500 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677(InterPro)
Mch2g1314 500 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 43 387 - -
Mch2g1314 500 ProSiteProfiles AP2/ERF domain profile. 234 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1314 500 SMART rav1_2 142 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1314 500 SMART rav1_2 234 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1314 500 Pfam AP2 domain 142 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1314 500 MobiDBLite consensus disorder prediction 353 370 - -
Mch2g1314 500 CDD AP2 142 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1314 500 MobiDBLite consensus disorder prediction 353 373 - -
Mch2g1314 500 Gene3D AP2/ERF domain 233 306 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1314 500 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1314 500 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1314 500 SUPERFAMILY DNA-binding domain 233 307 IPR016177 GO:0003677(InterPro)
Mch2g1314 500 CDD AP2 233 307 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1314 500 PRINTS Ethylene responsive element binding protein signature 287 307 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1314 500 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1314 500 MobiDBLite consensus disorder prediction 8 34 - -
Mch2g1314 500 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1224 Mch-Chr1:14575967 Mch2g1314 Mch-Chr2:9321250 3.98E-172 dispersed
Mch2g1314 Mch-Chr2:9321250 Mch5g1789 Mch-Chr5:18324343 5.61E-103 dispersed
Mch2g1314 Mch-Chr2:9321250 Mch2g0969 Mch-Chr2:6542028 9.20E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42950 PF00847 AP2 4.40E-10 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1314 K09284 - csv:101208665 707.212