Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1341 AACTTCAAATTCTCCGACAATTGGGCCTCTGAGTTACTCCTCCAAACAGCCATCGCTATTACCGACAATAACACTTCTCGCATCCAACAATTCATGTGGATGCTCAATGAACTTGGCTCCCCGTACGGCGACACTAACCAAAAGCTGGCTTTCTACTTCCTTCAAGCCATGTTTAGTCGCGTCATTGACTCCGGTGACCGATGCTATCGAAGCTTGGTGGCAGTGTCGGAGAAACGATCTTGTTTCGAGTTAACGAGAAGGATAGAGCTGAAGTTTCAAGAGATGAGTCCATGGATGACTTTTGGTCATGTAGCTTCCAATGGTGCCATAATGGAGGCTTTTGAAGGAGAACGAAAGTTGCACATAATTGATATTAGCAACTCCTTTTGTACCCAATGGCCGACCTTACTCGAAGCTCTTGCGACACGATCAAACGCCGAAATTCCTCACTTGAAGCTAACAATGCTAATTACCGCCAAATCTAATACCACCCTCGAATCTCAGAAGAAGATAATGAAGGAGATAAGTAAAAGAATGGAGAAATTCGGCAGACTTATGGGCGTTCCGTTCAAATTCAAGCCCATATTCCACTCCGGCGACGTTTCCGATATCAATTTCGCCCAATTAGGCGTCAAGACTGGCGAAGCAGTCGCCGTCAACTGCGTCGGCGCGTTGCGCTCCGTCGCGCCGGTTGGTAACCGGCGAGATTTTCTGATATCGCTGTTCCGAGGTTTGCGGCCGAGGATAATCACGGTGGTGGAGGAGGAGGCGGATCTCGCCGGCGGCGGCGTTGACTTAGTCAAAGACGTTCAAGAGTGCTTACGGTGGTTTTCGGTTTACTTCGATTCGTTGGCCGGAAGCTTCCCGACTGCCAGCAATGAGCAGTTGGCGATTGAACGCGCCGCCGGACTTGCCGTCGTGGACTTGCTGGCGCGCGAGCCGGCGGAGTCGGTGGAGAGGCGCGAGACTGCGGCGCGTTGGGCGCGTCGTTTGCATGGGGGTGGTTTTAATGCAGTGTCATTTAGCGAAGATGTAAACGAGGACGTACGGGCGCTTTTGAGGAGGTATAAGGAGGGGTGGACGGTGACGGAGGACGGCGACGGCGCCGGAATATTCTTGGCCTGGAAGGAGCAGCCGGTGGTGTGGGCCGCCGCATGG 1158 52.68 NFKFSDNWASELLLQTAIAITDNNTSRIQQFMWMLNELGSPYGDTNQKLAFYFLQAMFSRVIDSGDRCYRSLVAVSEKRSCFELTRRIELKFQEMSPWMTFGHVASNGAIMEAFEGERKLHIIDISNSFCTQWPTLLEALATRSNAEIPHLKLTMLITAKSNTTLESQKKIMKEISKRMEKFGRLMGVPFKFKPIFHSGDVSDINFAQLGVKTGEAVAVNCVGALRSVAPVGNRRDFLISLFRGLRPRIITVVEEEADLAGGGVDLVKDVQECLRWFSVYFDSLAGSFPTASNEQLAIERAAGLAVVDLLAREPAESVERRETAARWARRLHGGGFNAVSFSEDVNEDVRALLRRYKEGWTVTEDGDGAGIFLAWKEQPVVWAAAW 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9494540 9496424 + MC02g1115 Mch2g1341 682263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1341 386 ProSiteProfiles GRAS family profile. 1 386 IPR005202 -
Mch2g1341 386 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 386 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Mch2g1341 386 Pfam GRAS domain family 11 386 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1285 Mch-Chr1:15032342 Mch2g1341 Mch-Chr2:9494540 1.69E-180 dispersed
Mch2g1341 Mch-Chr2:9494540 Mch7g0125 Mch-Chr7:1544238 4.52E-133 dispersed
Mch2g1341 Mch-Chr2:9494540 Mch3g0228 Mch-Chr3:3043057 1.55E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42953 PF03514 GRAS 1.70E-97 CL0063 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1341 K27743 - csv:101210294 550.051