Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch2g1357 | CCCTCGATCTCCGCCTGGGCCCCACCCTCCGGCGCCGCCACGTTCTCCGACTTCCCCATCCCGGAGCCGCCACCCACCGCGCTGCAGCACCGCCACAAGCGCTGCGGCGGCGGCGGCGGCTCGATGGGGGCAATGAGGGAAATGATATTCAGAATCGCGGCGATGCAGCCAATCCACATAGACCCAGAGGCCATAAAGGCGCCGCGGCGGCGGAACGTGCGGATCTCGAAGGACCCACAGAGCGTGGCGGCGCGGCAGCGGCGGGAGAGGATCAGCCAGAAGATTCGGATCCTGCAGCGGCTGGTCCCCGGCGGCACCAAAATGGACACCGCCTCCATGCTCGACGAAGCCGTCCATTACGTCAAGTTTCTCAAGCGCCAACTTCACACCCTCCAGCAAACGGCCGCTGCGACGTCGTTTAACAACAACAACAACAATAATATTATTATGAGTAATCATAATATTAATAATTGTGCCAATAATATTAATATTAGCTATTCATCTGCGCTTTTGAAAGCTTCACACCTCCAA | 531 | 58.0 | PSISAWAPPSGAATFSDFPIPEPPPTALQHRHKRCGGGGGSMGAMREMIFRIAAMQPIHIDPEAIKAPRRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQLHTLQQTAAATSFNNNNNNNIIMSNHNINNCANNINISYSSALLKASHLQ | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 9653342 | 9653872 | - | MC02g1129 | Mch2g1357 | 682279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch2g1357 | 177 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 41 | 165 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch2g1357 | 177 | FunFam | BHLH transcription factor | 78 | 142 | - | - | |
| Mch2g1357 | 177 | Gene3D | - | 74 | 149 | IPR036638 | GO:0046983(InterPro) | |
| Mch2g1357 | 177 | SMART | finulus | 81 | 130 | IPR011598 | GO:0046983(InterPro) | |
| Mch2g1357 | 177 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 79 | 137 | IPR036638 | GO:0046983(InterPro) | |
| Mch2g1357 | 177 | CDD | bHLH_AtIND_like | 76 | 132 | - | - | |
| Mch2g1357 | 177 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 124 | IPR011598 | GO:0046983(InterPro) | |
| Mch2g1357 | 177 | Pfam | Helix-loop-helix DNA-binding domain | 83 | 125 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch11g0298 | Mch-Chr11:1879945 | Mch2g1357 | Mch-Chr2:9653342 | 9.65E-47 | dispersed | |
| Mch1g1019 | Mch-Chr1:13226753 | Mch2g1357 | Mch-Chr2:9653342 | 9.01E-42 | dispersed | |
| Mch2g1357 | Mch-Chr2:9653342 | Mch9g0278 | Mch-Chr9:2081253 | 2.24E-33 | dispersed | |
| Mch2g1357 | Mch-Chr2:9653342 | Mch8g0679 | Mch-Chr8:4848301 | 1.39E-47 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42954 | PF00010 | HLH | 1.90E-07 | No_clan | Mch | TF |
Pathway information