Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1357 CCCTCGATCTCCGCCTGGGCCCCACCCTCCGGCGCCGCCACGTTCTCCGACTTCCCCATCCCGGAGCCGCCACCCACCGCGCTGCAGCACCGCCACAAGCGCTGCGGCGGCGGCGGCGGCTCGATGGGGGCAATGAGGGAAATGATATTCAGAATCGCGGCGATGCAGCCAATCCACATAGACCCAGAGGCCATAAAGGCGCCGCGGCGGCGGAACGTGCGGATCTCGAAGGACCCACAGAGCGTGGCGGCGCGGCAGCGGCGGGAGAGGATCAGCCAGAAGATTCGGATCCTGCAGCGGCTGGTCCCCGGCGGCACCAAAATGGACACCGCCTCCATGCTCGACGAAGCCGTCCATTACGTCAAGTTTCTCAAGCGCCAACTTCACACCCTCCAGCAAACGGCCGCTGCGACGTCGTTTAACAACAACAACAACAATAATATTATTATGAGTAATCATAATATTAATAATTGTGCCAATAATATTAATATTAGCTATTCATCTGCGCTTTTGAAAGCTTCACACCTCCAA 531 58.0 PSISAWAPPSGAATFSDFPIPEPPPTALQHRHKRCGGGGGSMGAMREMIFRIAAMQPIHIDPEAIKAPRRRNVRISKDPQSVAARQRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQLHTLQQTAAATSFNNNNNNNIIMSNHNINNCANNINISYSSALLKASHLQ 177
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 9653342 9653872 - MC02g1129 Mch2g1357 682279
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1357 177 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 41 165 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch2g1357 177 FunFam BHLH transcription factor 78 142 - -
Mch2g1357 177 Gene3D - 74 149 IPR036638 GO:0046983(InterPro)
Mch2g1357 177 SMART finulus 81 130 IPR011598 GO:0046983(InterPro)
Mch2g1357 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 137 IPR036638 GO:0046983(InterPro)
Mch2g1357 177 CDD bHLH_AtIND_like 76 132 - -
Mch2g1357 177 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983(InterPro)
Mch2g1357 177 Pfam Helix-loop-helix DNA-binding domain 83 125 IPR011598 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0298 Mch-Chr11:1879945 Mch2g1357 Mch-Chr2:9653342 9.65E-47 dispersed
Mch1g1019 Mch-Chr1:13226753 Mch2g1357 Mch-Chr2:9653342 9.01E-42 dispersed
Mch2g1357 Mch-Chr2:9653342 Mch9g0278 Mch-Chr9:2081253 2.24E-33 dispersed
Mch2g1357 Mch-Chr2:9653342 Mch8g0679 Mch-Chr8:4848301 1.39E-47 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42954 PF00010 HLH 1.90E-07 No_clan Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1357 - - - 0.0