Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1383 GCCCACCAGATCCGGAAGGAGAAGCTCCGCCTGCAAGGCTTCCACACACCGCCACCTCCGTCATCGCTAGTTGGAATCGATGACGAGGACGACCAATCCAGCGGCGCGCTCCATCACGCCTACGACTCGGCCGGAATCTTATCGGAAATGTTCAATTTTCCTCCTCCTCCTCCGCCCGCCACCGCGACCGATTGGTACGGGAACCGACAAGCGATGAATGCGGACTCCGCCGTGGCCATGCAGCTTTATCTCATGAATCCAAACCCGCGGTCGCCGTCTCCGCCACCGCCAGTGTCGTCGTCAACGCTCCACATGCTCCTCCCAACTCCGCAGCCACCCTCTGGAGGGTCTTTCGGACAATTCACATGGGGGATGGTTCCGGACAGCGATGGCCACTCCTCCTCAAACCCTAACGAAGGGCGGCTCTCACTGTCGCTGTCGTCGTCGTTGGAGGCCGCCAAAGCTGAGGAGTTGCGAATGGGAGGCGATACCGGGTTACTCTATCAAAACCCCCATCACCACCACCACCACCACCTCCATACCGCCGCCGCCGCCTCCAATTCGCTGAGGAACTCAAAATACGTGAAAGCCGCACAAGAACTATTGGAGGAGTTCTGTAGCGTGGGAAGAGGCCAGTTTAAAAAAAGTAACAACAACAACACCAATAATAAATTGAGAAACAGAAACTTGCCCTCCACCACCGGAGCCGCCGCAGACGGCGGCGGAGCCTCTTCAATGGCATCCAAGGATCAGTCACAGCCGCCGCAGCCAGCTCTGTCTGCAGCTGATAGAATTGAACATCAGAGAAGGAAGGTCAAATTGTTATCTATGCTTGATGAGGCATGTGATCGGAGGTACAACCACTACTGCGAGCAGATGCAAATGGTGGTGAACTCGTTCGACATGGTGATGGGGATGGGGATGGGGGCAGCGGTACCATACACGGCGCTAGCGCAGAAGGCGATGTCGAGGCACTTCAGGTGCTTGAAGGACGCGATATCGACGCAGCTGAAGCAGAGCTGTGAGATGCTGGGAGAGAAGGATGGGGGGAGAGGGATGGGGATTACGAAAGGGGAGACGCCGCGGCTGAAGCTGCTGGAGCAAAGCCTCAGGCAGCAGCGAGCGTTCCACCAAATGGGGATGATGGAGCAGGAGGCTTGGCGCCCCCAGCGTGGCTTGCCCGAACGCTCCGTCAACATCTTGAGAGCCTGGCTCTTCGAGCACTTCCTTCACCCGTACCCTAGTGATGCTGATAAGCATTTGCTGGCTCGACAGACCGGTTTATCGAGAAATCAGGTATCAAATTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAAGAGGAAGATGATGATGATAATAATAATAACAACACAGATGGGAGAGAAATCAGCACACAGGTGGCGCCACCTCCGCTGCCGCCCCACGGCCACTGCAGCACCTTCCCGCCAGCCCTCCTCTATGATTCAGACCTCCAGGACACGTGTCGCCGCGTCAGCGCCCTCGCTGCAGCTGCCACCGATCACCACGGCCAGTTCGGGACCACCACCTCCGCTGCCACATCTGACGTGGCGGGCCCCACGCTCATCAGGTTCGGGACCACCACCGCCGGTGACGTGTCACTCACCCTAGGTTTACGCCACGCTGGAAACATGCCCGACAACAATTCTTCTTTCTCCCTCAGATCGGAATTTGGA 1731 57.19 AHQIRKEKLRLQGFHTPPPPSSLVGIDDEDDQSSGALHHAYDSAGILSEMFNFPPPPPPATATDWYGNRQAMNADSAVAMQLYLMNPNPRSPSPPPPVSSSTLHMLLPTPQPPSGGSFGQFTWGMVPDSDGHSSSNPNEGRLSLSLSSSLEAAKAEELRMGGDTGLLYQNPHHHHHHHLHTAAAASNSLRNSKYVKAAQELLEEFCSVGRGQFKKSNNNNTNNKLRNRNLPSTTGAAADGGGASSMASKDQSQPPQPALSAADRIEHQRRKVKLLSMLDEACDRRYNHYCEQMQMVVNSFDMVMGMGMGAAVPYTALAQKAMSRHFRCLKDAISTQLKQSCEMLGEKDGGRGMGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKEEDDDDNNNNNTDGREISTQVAPPPLPPHGHCSTFPPALLYDSDLQDTCRRVSALAAAATDHHGQFGTTTSAATSDVAGPTLIRFGTTTAGDVSLTLGLRHAGNMPDNNSSFSLRSEFG 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9999709 10005617 - MC02g1152 Mch2g1383 682305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1383 577 MobiDBLite consensus disorder prediction 211 234 - -
Mch2g1383 577 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 147 468 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch2g1383 577 SUPERFAMILY Homeodomain-like 388 454 IPR009057 -
Mch2g1383 577 Gene3D - 390 452 - -
Mch2g1383 577 MobiDBLite consensus disorder prediction 163 186 - -
Mch2g1383 577 FunFam BEL1-like homeodomain protein 4 390 452 - -
Mch2g1383 577 SMART HOX_1 387 451 IPR001356 GO:0003677(InterPro)
Mch2g1383 577 MobiDBLite consensus disorder prediction 1 34 - -
Mch2g1383 577 MobiDBLite consensus disorder prediction 127 142 - -
Mch2g1383 577 SMART prehox3 183 335 IPR006563 -
Mch2g1383 577 CDD homeodomain 387 448 IPR001356 GO:0003677(InterPro)
Mch2g1383 577 MobiDBLite consensus disorder prediction 455 491 - -
Mch2g1383 577 MobiDBLite consensus disorder prediction 211 265 - -
Mch2g1383 577 ProSiteProfiles 'Homeobox' domain profile. 384 447 IPR001356 GO:0003677(InterPro)
Mch2g1383 577 MobiDBLite consensus disorder prediction 102 118 - -
Mch2g1383 577 Pfam Associated with HOX 189 334 IPR006563 -
Mch2g1383 577 MobiDBLite consensus disorder prediction 87 142 - -
Mch2g1383 577 Pfam Homeobox KN domain 404 443 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1154 Mch-Chr1:14015144 Mch2g1383 Mch-Chr2:9999709 6.95E-142 dispersed
Mch2g1383 Mch-Chr2:9999709 Mch6g2413 Mch-Chr6:26062387 3.47E-75 dispersed
Mch2g1383 Mch-Chr2:9999709 Mch2g0220 Mch-Chr2:1684991 1.87E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42957 PF07526 POX 5.20E-48 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1383 - - - 0.0