Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1427 TCGTCAAATTCCCCGTGCGCGGCGTGCAAATTCCTCCGGCGAAAATGCACACAAGAATGCGTGTTCGCGCCGTATTTCCCACCGGATCAGCCGCAGAAATTCGCCAACGTCCACAAGGTATTCGGTGCGAGCAACGTCGCGAAGCTGCTGAACGAACTGAACGCAACGCAGCGGGAGGACGCGGTAAACTCATTAGCCTACGAGGCGGAGTTCAGGCTGCGGGACCCAGTCTACGGCTGCGTAGGCCTAATCTCCGTACTCCAGCACAGGCTAAAGCAAATGCAGAGCGACCTCTACAACGCCAAAAAGGAACTCGCCACCTACATTGGTCCCCAGGCTATGCTCCCCATTCTACAGCCTCCCACCACCGCCATTCTCCCCGCCGCCGCTGCCAGCCCTTCCTCCTCCGCTGTCTTGCCGTACAACATGTCCCCTATGCTCGGGATTCCCCCGTCTGGGTCCGGTCAGATGGTGATTCGCGACTCCGCTCAGCAGATTCACCACCATCACCAGCAGCAGCAGCAGCAGCTCTACGAGGCGCAGCAGCTCGCGGCGGCGGTGGCTGCCAGAGAGCAGCAGGAGATGTTTAGAGCGTACGAGCAGAAACAGCACCACCATTTGAGGTTCAATGGCTTCGACCCGGCGGCTGCTGGGGCTGGAGCAGGAGGAGGAGGAGGAGCAGGGTTTAATCAGATGAATTCCGCTTCCGGTTTGACATTGGGAACATTCGATAACAATAGCTACCAAATCCAATCGCAACCGGAGCATCATCATCATAATCATTCTTCTTCTTCTTCACACCACCACCATCAGCAGCAGCAGCAGCAACTTCAGGTACAGCTCTTTCTCCAGCCTCAACAAACGCAGGTTGAGCAGCAGCAGCACCAATCACACCAAAACCAACACTCCTCCTCCTCCCACAAGCCGGAAGCCGCCGCCGCCGCAGATGATGGTAGGAATATTAATAACATTGGCCCCTCTTGT 984 56.81 SSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHRLKQMQSDLYNAKKELATYIGPQAMLPILQPPTTAILPAAAASPSSSAVLPYNMSPMLGIPPSGSGQMVIRDSAQQIHHHHQQQQQQLYEAQQLAAAVAAREQQEMFRAYEQKQHHHLRFNGFDPAAAGAGAGGGGGAGFNQMNSASGLTLGTFDNNSYQIQSQPEHHHHNHSSSSSHHHHQQQQQQLQVQLFLQPQQTQVEQQQHQSHQNQHSSSSHKPEAAAAADDGRNINNIGPSC 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10525986 10526969 - MC02g1186 Mch2g1427 682349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1427 328 Coils Coil 84 104 - -
Mch2g1427 328 MobiDBLite consensus disorder prediction 251 328 - -
Mch2g1427 328 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Mch2g1427 328 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Mch2g1427 328 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 289 - -
Mch2g1427 328 MobiDBLite consensus disorder prediction 267 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2070 Mch-Chr1:20064477 Mch2g1427 Mch-Chr2:10525986 2.73E-39 dispersed
Mch2g1427 Mch-Chr2:10525986 Mch8g2579 Mch-Chr8:28931017 3.67E-58 dispersed
Mch2g1427 Mch-Chr2:10525986 Mch8g1482 Mch-Chr8:11184109 1.38E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42964 PF03195 LOB 2.70E-41 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1427 - - - 0.0