Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch2g1792 ATGGCCGATGCTGAGGATATCCAGCCACTTGTTTGCGATAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCCCGACACACCGGTGTCATGGTGGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCACGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAACGAGCTTCGTGTTGCACCGGAAGAACACCCAGTGCTTCTAACAGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAGACTTTTAATGTACCTGCCATGTATGTTGCCATCCAAGCCGTTCTATCTCTGTACGCCAGTGGTCGTACAACAGGTATTGTGCTCGACTCCGGTGATGGTGTTAGTCACACTGTACCAATCTACGAGGGTTACGCCCTACCCCATGCTATCCTCCGTCTGGACCTTGCTGGTCGGGATCTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAGCTTGCCTATGTTGCTCTTGACTATGAGCAGGAACTTGAGACTGCCAAGAGCAGCTCCTCAATTGAGAAGAACTATGAACTGCCTGATGGACAAGTCATCACAATCGGAGCTGAGAGATTCCGTTGCCCCGAAGTTCTGTTCCAGCCTTCCCTCATCGGAATGGAAGCTGCAGGAATACACGAGACTACCTACAACTCAATCATGAAGTGTGATGTGGATATCAGAAAAGATTTATATGGCAACATTGTTCTCAGTGGTGGTTCGACCATGTTCCCTGGTATTGCAGACCGAATGAGCAAAGAGATCACCGCTCTTGCTCCCAGCAGCATGAAAATTAAGGTCGTTGCGCCCCCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCAATCCTTGCATCACTCAGCACCTTCCAGCAGATGTGGATTTCGAAGGGCGAATACGATGAATCTGGCCCATCCATCGTCCACAGGAAGTGCTTCTAA 1134 48.15 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17032988 17036262 - MC02g1395 Mch2g1792 682714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch2g1792 377 PRINTS Actin signature 51 62 IPR004000 -
Mch2g1792 377 PRINTS Actin signature 63 85 IPR004000 -
Mch2g1792 377 PRINTS Actin signature 142 161 IPR004000 -
Mch2g1792 377 PRINTS Actin signature 28 37 IPR004000 -
Mch2g1792 377 PRINTS Actin signature 117 130 IPR004000 -
Mch2g1792 377 PRINTS Actin signature 238 254 IPR004000 -
Mch2g1792 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Mch2g1792 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Mch2g1792 377 FunFam Major actin 261 340 - -
Mch2g1792 377 FunFam Actin, muscle 182 273 - -
Mch2g1792 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Mch2g1792 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Mch2g1792 377 SMART actin_3 7 377 IPR004000 -
Mch2g1792 377 FunFam Putative actin-related protein 5 341 369 - -
Mch2g1792 377 Gene3D - 140 340 - -
Mch2g1792 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Mch2g1792 377 Pfam Actin 5 377 IPR004000 -
Mch2g1792 377 Gene3D - 10 371 - -
Mch2g1792 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Mch2g1792 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Mch2g1792 377 FunFam Actin, alpha skeletal muscle 3 180 - -
Mch2g1792 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Mch2g1792 377 PANTHER ACTIN 8 369 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1037 Mch-Chr1:13374934 Mch2g1792 Mch-Chr2:17032988 1.11E-153 dispersed
Mch1g1038 Mch-Chr1:13375724 Mch2g1792 Mch-Chr2:17032988 5.45E-71 dispersed
Mch2g1792 Mch-Chr2:17032988 Mch5g1440 Mch-Chr5:15488245 3.54E-273 dispersed
Mch2g1792 Mch-Chr2:17032988 Mch1g0721 Mch-Chr1:11115765 1.68E-271 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch2g1792 K10355 - csv:101215469 758.059