Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0010 GTGGACGCTTTGCTCGACATCAAGAAAAGTTTGATCGATCCTAATCAGAATCTGAGCAACTGGAACAAGGGAGATCCATGTATCTCAAACTGGACTGGTGTTCTGTGCTTCAATACCACATTGGATGATAGCTATCTACATGTTGCTGAATTGCAACTTCTAAACATGAGTTTATCAGGAAATTTATCACCTGCACTTGGCCGTTTATCTTACCTGAAAGTTTTGGACTTTATGTGGAATGAGATAAGTGGTAGAATACCAGGAGAGATTGGCAATCTAACGTCCCTAGAACTGTTGCTTCTGAACGGAAACCAGTTGTCAGGTCCATTGCCTGAAGATCTTGGGAAGCTTCTACATCTAGACAGAATACAGATTGACGAGAACCAAATATCAGGACCAATACCTAAGACATTCGCAAACTTAAAAGCAACAAAGCATTTCCACATGAATAACAATTCTATTAGTGGAGAAATCCCATCTGAGTTATCTGGATTGCCAAATCTTGTCCACTTCCTTCTTGACAATAACAACCTATCAGGGAATCTTCCACCCGAGTTGTTTAAATTGCCGAACTTAGAAATACTCCAACTCGACAACAACAATTTTAGCCAGTCTAGTATACCAGATAGTTATGGAAATATGACTAAATTGTTGAAATTGAGTCTAAGGAACTGTAACTTGCAAGGACCTATTCCTGATTTGAGCATGATAAAAAACCTCGGTTATCTAGATCTAAGCTCCAATCAGCTAAGTGGATTCATACCACGGAATAAACTTTCTGAGAATATCACAACCATATTTTTATCTAACAACCATCTTACTGGCACCATACCATCCAATCTTTCGGGTCTGCCACATCTTCAGAAATTGTCAATTGCAAATAATTCATTGAACGGCTCTGTTCCATCCACCATTTGGCAAAGCAGGACGCTAAATTCTTTGGACAGCCTTACCATAGAGCTGCAGAACAATAAATTTTCAGATATTCTGGGAAGCATTGATCTCCCTCTGAATGTCACTGTCTGGCTTCAAGGAAATCCTGCTTGCTCTAATAACAGCTTGGGGGAGTTTTGCGGATCTGAGAGTGAGGATATAATTGACATTCCAACAAATAACACTCTAGGCTGTTCTGGGCCAATATGCCCACCTTCTTATGAATGTTACTCAGCAAAATGTCCCTCGTTTTGTATCTGTTCTGCACCTCTGCTTATTGGATATCGGTTGAAAAGTCCCGGATTTTCACGTTTTAGTCCATATCAACATATGTTTGAGGAGTATCTGACCAATGGTCTTAAGTTACATCTTGAACAATTGGACATTGGTTCTCCTGTGTGGGAAAAGGGACCTCGATTAAGAATGAACCTGAAGATTTTCCCACTATTTGTTGCTGATAGTAATAGTTCTCACATGTTCAATGACAGTGAGGTTCGACGAATCGTTGCCAAATTTACAAATTGGAAAATTCAAGATAGTGATATATTTGGACCATATGAACTTCTAAGCTTGACAATATCAGACATCTATAAGAATGTATTTTTTACACCGTCATCTAATTCTAATATTAGCAAAGGCGCATTGGCTGGAATAATATTAGGAGCAATTGCAGGCGGGGTAACGCTCTCTGCAATCGTTTTTCTTTTTATTATAAGATCACGTGCAAGGGGCCACCATAACTCAAGAAGGCGTCACTTCACAAAGGCCTACATGAAGATTGAGGGTGTAAAGGAGTTTGGTTTTCATGAAATGGCCCTAGCTACAAACAATTTTCATGATTCCATGGTAGTTGGTCAAGGCGGTTATGGAAAGGTTTACAAAGGAATTCTAGCAGATAACACAACTATCGCTATCAAACGTGCACTGGAGGGCTCCCTACAGGGTGAAAAAGAGTTCTTAACTGAAATACAATTGTTGTCAAGGTTACACCACCGAAATCTTGTGGCGTTGATTGGATATTGTGATGAAGAAGGGGAGCAGATGTTGGTTTATGAGTTTATGTCAAATGGCACGCTGAGGGATCACCTTTCTGTAAATTCTACCGAACCTTTAAGTTTTGCCACAAGATTAAAAGCTGCCCTGGGTGCTGCTAAGGGAATCCTATACCTACATACGGAAGCTGATCCTCCAATATTCCACCGGGATATCAAGTCCAGCAACATATTATTAGACTCCAAATTTATGGCAAAGGTTGCTGATTTTGGACTCTCACGACTTGCACCTCTACCTGATACCGAAGGTGATGTGCCTGCTCATGTATCGACAGTTGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTCTTGACTCATAAATTGACAGATAAGAGTGATGTTTATAGTCTTGGTGTTGTGTTAATGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATCGTCAGAGAGGTTAAGGTTGGATATCAGTCCGGAAAGATTTTCTCAATAATTGATGGACGATTGGGCTCATATCCCGTTGAATGCGTGGAAAGGTTTGTGACATTGGCTCTTAAGTGTTGCCAAGACGACCCCGATGCACGCCCTTCAATGGCAGAAGTTGTTCGAACACTTGAAAGTATCTGGCTTATGCTGCCAGAGTCTGATGCGAAAATTGGGGAGCCTTTGATCGCCGATGTGATAAAAGTGACTAGTCCTCCGTCTTCATCATCCAACATGAACAATTTTTACATATCAGAAGTCTCTGGCAGCAACCTTGTAAGTGGAGTAATTCCCACCATCACACCCAGGTAG 2754 40.99 VDALLDIKKSLIDPNQNLSNWNKGDPCISNWTGVLCFNTTLDDSYLHVAELQLLNMSLSGNLSPALGRLSYLKVLDFMWNEISGRIPGEIGNLTSLELLLLNGNQLSGPLPEDLGKLLHLDRIQIDENQISGPIPKTFANLKATKHFHMNNNSISGEIPSELSGLPNLVHFLLDNNNLSGNLPPELFKLPNLEILQLDNNNFSQSSIPDSYGNMTKLLKLSLRNCNLQGPIPDLSMIKNLGYLDLSSNQLSGFIPRNKLSENITTIFLSNNHLTGTIPSNLSGLPHLQKLSIANNSLNGSVPSTIWQSRTLNSLDSLTIELQNNKFSDILGSIDLPLNVTVWLQGNPACSNNSLGEFCGSESEDIIDIPTNNTLGCSGPICPPSYECYSAKCPSFCICSAPLLIGYRLKSPGFSRFSPYQHMFEEYLTNGLKLHLEQLDIGSPVWEKGPRLRMNLKIFPLFVADSNSSHMFNDSEVRRIVAKFTNWKIQDSDIFGPYELLSLTISDIYKNVFFTPSSNSNISKGALAGIILGAIAGGVTLSAIVFLFIIRSRARGHHNSRRRHFTKAYMKIEGVKEFGFHEMALATNNFHDSMVVGQGGYGKVYKGILADNTTIAIKRALEGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLVYEFMSNGTLRDHLSVNSTEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKFMAKVADFGLSRLAPLPDTEGDVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVLMELLTGRHPISHGKNIVREVKVGYQSGKIFSIIDGRLGSYPVECVERFVTLALKCCQDDPDARPSMAEVVRTLESIWLMLPESDAKIGEPLIADVIKVTSPPSSSSNMNNFYISEVSGSNLVSGVIPTITPR 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 81591 122171 - MC03g0009 Mch3g0010 682913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0010 917 SUPERFAMILY L domain-like 12 377 - -
Mch3g0010 917 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 665 874 - -
Mch3g0010 917 ProSiteProfiles Leucine-rich repeat profile. 239 260 IPR001611 GO:0005515(InterPro)
Mch3g0010 917 CDD STKc_IRAK 595 861 - -
Mch3g0010 917 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g0010 917 Pfam Protein kinase domain 590 856 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0010 917 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
Mch3g0010 917 ProSiteProfiles Protein kinase domain profile. 589 863 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0010 917 SMART serkin_6 589 863 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0010 917 Pfam Leucine rich repeat N-terminal domain 1 36 IPR013210 -
Mch3g0010 917 Gene3D Ribonuclease Inhibitor 1 261 IPR032675 -
Mch3g0010 917 PANTHER RECEPTOR-LIKE PROTEIN 55 18 859 - -
Mch3g0010 917 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 258 385 - -
Mch3g0010 917 Pfam Leucine Rich Repeat 262 284 IPR001611 GO:0005515(InterPro)
Mch3g0010 917 Pfam Leucine Rich Repeat 286 306 IPR001611 GO:0005515(InterPro)
Mch3g0010 917 Pfam Leucine Rich Repeat 239 256 IPR001611 GO:0005515(InterPro)
Mch3g0010 917 Pfam Leucine Rich Repeat 95 117 IPR001611 GO:0005515(InterPro)
Mch3g0010 917 Gene3D Transferase(Phosphotransferase) domain 1 665 869 - -
Mch3g0010 917 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 1 159 - -
Mch3g0010 917 SMART LRR_typ_2 93 117 IPR003591 -
Mch3g0010 917 SMART LRR_typ_2 284 308 IPR003591 -
Mch3g0010 917 SMART LRR_typ_2 165 189 IPR003591 -
Mch3g0010 917 Gene3D Ribonuclease Inhibitor 262 352 IPR032675 -
Mch3g0010 917 ProSitePatterns Protein kinases ATP-binding region signature. 595 617 IPR017441 GO:0005524(InterPro)
Mch3g0010 917 Gene3D Phosphorylase Kinase; domain 1 550 664 - -
Mch3g0010 917 FunFam Leucine-rich repeat protein kinase family protein 553 664 - -
Mch3g0010 917 SUPERFAMILY Protein kinase-like (PK-like) 575 883 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1882 Mch-Chr2:18935765 Mch3g0010 Mch-Chr3:81591 2.61E-18 dispersed
Mch3g0010 Mch-Chr3:81591 Mch5g2026 Mch-Chr5:19850283 4.42E-99 dispersed
Mch8g3226 Mch-Chr8:34326654 Mch3g0010 Mch-Chr3:81591 4.10E-52 dispersed
Mch3g0010 Mch-Chr3:81591 Mch1g0602 Mch-Chr1:10190215 6.04E-233 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77238 PF00069 Pkinase 4.60E-48 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0010 - - - 0.0