Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0013 GCCGAATTAAAGAAAATTTCACACAGAGAAATTGATTTGAATAACGCTGGGACTGGGCGAGTAAAAGCGCGAGCTTCTCTTCCATTCTTGCAGAACTTCTCTCCCACGCCGTCGTCTCGACTCTCGCCCTCGTCTTCTCTATCGCCCTCGTCTTCACTGTTGTCGTCTGTTACTATTGAAGAAGGAATCATGGCGGACGAAGTTCAGAATGACGTGAACGAACAGGTGGCAGATATTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTGCTTCAGGATCCGGCTGATGAGTCTGTTGACAAGTTAGCAGAGAAAACCGAAAGCTTGTCAGTTTCTGAAGGACTCGAGACTACGACCTTTTCTGGACTTAAAAAGAAGAAGAAAAAACCAGTAGAGGCCAGCTCATTGAATGATGATGGTGTAGATGCCACAGAGGATTTGGATGATCAAGTGGGGGAGAATGAAGAACGAGAGCGTATTGTTCTACAATATCGTTTTCCTTGGGAGGGAAGTGATCGTGATTATGAATATGAGGAGCTTCTTGGACGGGTATTCAACATTCTTAGAGAAAATAATCCGGAACTTGCCGGGGATAGGCGTAGAACAGTTATGAGGCCCCCACAAGTTCTTCGTGAGGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTATTGGCTGAACTGGGAACCAGTGGATCTCTTGATGGACAGCAGAGATTAGTAGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTCAATGAATATGTGATTTGTATTGGGTGCAAAAGTCCAGACACTATCCTTTCAAAGGAAAATCGACTCTTCTTTCTCAGATGTGAGAAGTGTGGTTCTGGACGATCGGTTGCTCCAATTAAAGCTGGCTTTGTTGCTCGTGTTGGCCGGAGGAATGCTGGAACATGA 1002 44.71 AELKKISHREIDLNNAGTGRVKARASLPFLQNFSPTPSSRLSPSSSLSPSSSLLSSVTIEEGIMADEVQNDVNEQVADIAPFDPTKKKKKKKVVLQDPADESVDKLAEKTESLSVSEGLETTTFSGLKKKKKKPVEASSLNDDGVDATEDLDDQVGENEERERIVLQYRFPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 145061 152844 + MC03g0011 Mch3g0013 682916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0013 333 MobiDBLite consensus disorder prediction 87 150 - -
Mch3g0013 333 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 178 285 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Mch3g0013 333 MobiDBLite consensus disorder prediction 124 139 - -
Mch3g0013 333 FunFam Eukaryotic translation initiation factor 2 subunit 176 318 - -
Mch3g0013 333 Pfam Domain found in IF2B/IF5 202 311 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Mch3g0013 333 SMART eIF2Bneu4 203 312 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Mch3g0013 333 Gene3D - 176 318 - -
Mch3g0013 333 MobiDBLite consensus disorder prediction 32 53 - -
Mch3g0013 333 MobiDBLite consensus disorder prediction 93 111 - -
Mch3g0013 333 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 282 317 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Mch3g0013 333 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 88 320 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0013 Mch-Chr3:145061 Mch9g0002 Mch-Chr9:10283 2.77E-169 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0013 K03238 - csv:101220978 506.138