Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g0013 | GCCGAATTAAAGAAAATTTCACACAGAGAAATTGATTTGAATAACGCTGGGACTGGGCGAGTAAAAGCGCGAGCTTCTCTTCCATTCTTGCAGAACTTCTCTCCCACGCCGTCGTCTCGACTCTCGCCCTCGTCTTCTCTATCGCCCTCGTCTTCACTGTTGTCGTCTGTTACTATTGAAGAAGGAATCATGGCGGACGAAGTTCAGAATGACGTGAACGAACAGGTGGCAGATATTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTGCTTCAGGATCCGGCTGATGAGTCTGTTGACAAGTTAGCAGAGAAAACCGAAAGCTTGTCAGTTTCTGAAGGACTCGAGACTACGACCTTTTCTGGACTTAAAAAGAAGAAGAAAAAACCAGTAGAGGCCAGCTCATTGAATGATGATGGTGTAGATGCCACAGAGGATTTGGATGATCAAGTGGGGGAGAATGAAGAACGAGAGCGTATTGTTCTACAATATCGTTTTCCTTGGGAGGGAAGTGATCGTGATTATGAATATGAGGAGCTTCTTGGACGGGTATTCAACATTCTTAGAGAAAATAATCCGGAACTTGCCGGGGATAGGCGTAGAACAGTTATGAGGCCCCCACAAGTTCTTCGTGAGGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCATCGGCAGCCAGACCATGTCATGGCTTTCTTATTGGCTGAACTGGGAACCAGTGGATCTCTTGATGGACAGCAGAGATTAGTAGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTCAATGAATATGTGATTTGTATTGGGTGCAAAAGTCCAGACACTATCCTTTCAAAGGAAAATCGACTCTTCTTTCTCAGATGTGAGAAGTGTGGTTCTGGACGATCGGTTGCTCCAATTAAAGCTGGCTTTGTTGCTCGTGTTGGCCGGAGGAATGCTGGAACATGA | 1002 | 44.71 | AELKKISHREIDLNNAGTGRVKARASLPFLQNFSPTPSSRLSPSSSLSPSSSLLSSVTIEEGIMADEVQNDVNEQVADIAPFDPTKKKKKKKVVLQDPADESVDKLAEKTESLSVSEGLETTTFSGLKKKKKKPVEASSLNDDGVDATEDLDDQVGENEERERIVLQYRFPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 145061 | 152844 | + | MC03g0011 | Mch3g0013 | 682916 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g0013 | 333 | MobiDBLite | consensus disorder prediction | 87 | 150 | - | - | |
Mch3g0013 | 333 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 178 | 285 | IPR016189 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Mch3g0013 | 333 | MobiDBLite | consensus disorder prediction | 124 | 139 | - | - | |
Mch3g0013 | 333 | FunFam | Eukaryotic translation initiation factor 2 subunit | 176 | 318 | - | - | |
Mch3g0013 | 333 | Pfam | Domain found in IF2B/IF5 | 202 | 311 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Mch3g0013 | 333 | SMART | eIF2Bneu4 | 203 | 312 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Mch3g0013 | 333 | Gene3D | - | 176 | 318 | - | - | |
Mch3g0013 | 333 | MobiDBLite | consensus disorder prediction | 32 | 53 | - | - | |
Mch3g0013 | 333 | MobiDBLite | consensus disorder prediction | 93 | 111 | - | - | |
Mch3g0013 | 333 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 282 | 317 | IPR016190 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Mch3g0013 | 333 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 88 | 320 | IPR045196 | GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g0013 | Mch-Chr3:145061 | Mch9g0002 | Mch-Chr9:10283 | 2.77E-169 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g0013 | K03238 | - | csv:101220978 | 506.138 |