Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0018 ATGGGGTCCAACCGCTGCATGAACACTTCTTGCGGAGCCGCCACGCCGCACGACTGGACCAAAGGATGGCCTCTCGGATCCGCCGGATTCGCACATCTCTGCCTCAAATGCGGATCTGCTTATGAAAATTTGATCTTCTGTGATACATATCACTCGGAGGAGACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATTCACTGTGGATGTATAGCTTCGAAGTCTTTGTTTGAATGTCTGGATTATGGAGGTGTTGGGTGTACTAGCTGTGTGAAGAGATCTCAACTTGATGCGATCCGAAGAGATGAAATTTCTAATGGCTTTGATGCAGTGACAGTTGGTAATGTTGGCCTTCTGCAATCTGGTTCTGTTGAGGACCGGGCGGTTCGAAATGGTATTAATGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAGTGAAACCGACCATTTTCAGCAACCTCAAAGAGTTGACAGAATTGCATCTCCTGTGCAGAACAAACGAGAAAATTTCCGGAGCCCATTTGAGGAAGTTGGAACAAGCTTTTTTAACATGACTAAACTATCTGTTAAACGCCAACCACCTGTTGGTTCAATAATGTATTCCAAACTAGATACTAGCAGACCACTCTTAGAACTAAAAGATATGCAAGAATCTCTTAGCCGGCCATCGTTAAATATGACTCTGGGAGTTCCATCAGGTGCACCGAATTTTGTGGTACCTGTTTCAGGAAGTGCTGCTGAAGAGGATGAAAAGAGCATTCTGCCTTCATTTCAACAGGGTCAAAGATCTCGTCCAATATTTCCTAAGCCCTTAAAAACCGGGGCAACAGTTAATTCCGAAGCAAGAAAGGGAATGGTGCCTATGGTGCGTATTGCTCGGCCACCTGCTGAAGGTCGGGGTAAGAATCAACTTCTTCCACGGTACTGGCCAAGGATTACTGACCAAGAGCTAGAACAATTAGCTGGAGATTTGAATTCTACTATTGTTCCACTTTTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGCCGAATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCTATCTCTCAATCAGAAGGTCTTCCTGTTAGGATTCAAGATGTGAAAGGGAATGAATGGACTTTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTTTGGAGGGCGTCACCCCTTGCATACAGTCCATGCAATTACGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGTCAATTAGTCATGGGATTTCGGAAAGCGACAAATTCCACTGATATGCAGGATGCCAAGATCTCTACAGTTCCTAATGGCTCTCACTCGGGCGATGCCTCATATTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGATGGAGATATTAGCTTGCATAATTGTGAAAATTTTGGCGGGAAGACAAATGATGCTTCAGGACAACAACCAATGTTGCCCGTGGAGAAGAAAGGGGCTCGAAACATTGGGTCTAAGAATAAAAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACATGGGAAGAAGCTCAAGATCTACTCCGCCCTCCACCAAGTGCAAATCCCACCATTGTCACTATTGATGACCATGAATTTGAAGAGTATGATGAACCTCCAGTCTTTGGCAAACGGACTATATTCACTGTCACATCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGTTCAAAATGGCGGAGGTTGCCTGTGGACGTTCTTCTCCCTCCAAAGTGGACTTGTTCGGATAATGTTTGGGATTTGAGCAGGTGTACATGTTCTGCCCCAGAAGAGATCAGCACAAAGGAACAAGAGAATCTTCTTAGAGCAAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTACTCAAGATCTTGAGCCTTCTGGTTTGGATGCGCTGGCCAGTGCTGCTGTGCTGGGTGATAGTATGGTTGACTTGCAGGAATTGGGTACAACAACTAGACATCCTCGACACCGACCAGGATGCACGTGCATTGTGTGTATTCAGCCGCCAAGTGGGAAGGGAAAGCATAAGTCCACATGCACATGCAATGTCTGCTTGACTGTTAAACGTCGTTTTAAAACACTCATGCTGCGGAAGAAGAAACGCCAATCTGAACGTGAAGTTGAGACTCTGCTCAAGGATGGGAATCCACAATTCGACGTGTCAGGAATGAGCGGGACAGTGAGGGATACATTGCTGCACACAGACCATTCAGAGAATGAAGGAAGTCAGAGTAGGATTAAAGACAGGGAGGCTGCAATTAGCAGTGGGCAAATTGACTTGAACTGCCACCCCGACCGAGAGGACATGCAACTGGAGGTAGCAGGATTAAGCATGATGAGCCTTGTCGAGGCTGCCAGCCAACCTTTAGACAGCTACACAAAGCAAATTGGAGTCTCCAGCGTTACAAGTGAGCAGCAGTCCAGTCAACCAAGTAGCGCAGAGAGTGAGAGACGCCTATCTGATGAAGGGTGTCATGGATCGGGACATGAGAGCACAAGCAACGGATGCAGAGAAGAGCACCATTGA 2613 45.85 MGSNRCMNTSCGAATPHDWTKGWPLGSAGFAHLCLKCGSAYENLIFCDTYHSEETGWRDCSFCGKRIHCGCIASKSLFECLDYGGVGCTSCVKRSQLDAIRRDEISNGFDAVTVGNVGLLQSGSVEDRAVRNGINEEKLLQLCNIMEASETDHFQQPQRVDRIASPVQNKRENFRSPFEEVGTSFFNMTKLSVKRQPPVGSIMYSKLDTSRPLLELKDMQESLSRPSLNMTLGVPSGAPNFVVPVSGSAAEEDEKSILPSFQQGQRSRPIFPKPLKTGATVNSEARKGMVPMVRIARPPAEGRGKNQLLPRYWPRITDQELEQLAGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDMQDAKISTVPNGSHSGDASYSGVFQNLPLRADGDISLHNCENFGGKTNDASGQQPMLPVEKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVTSTGEQKQWAQCDDCSKWRRLPVDVLLPPKWTCSDNVWDLSRCTCSAPEEISTKEQENLLRASKDFKKRKIMKSQKSTQDLEPSGLDALASAAVLGDSMVDLQELGTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVETLLKDGNPQFDVSGMSGTVRDTLLHTDHSENEGSQSRIKDREAAISSGQIDLNCHPDREDMQLEVAGLSMMSLVEAASQPLDSYTKQIGVSSVTSEQQSSQPSSAESERRLSDEGCHGSGHESTSNGCREEHH 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 173512 187306 + MC03g0013 Mch3g0018 682921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0018 870 ProSiteProfiles Zinc finger CW-type profile. 574 624 IPR011124 GO:0008270(InterPro)
Mch3g0018 870 CDD B3_DNA 334 435 IPR003340 GO:0003677(InterPro)
Mch3g0018 870 Gene3D - 570 623 - -
Mch3g0018 870 SMART B3_2 336 436 IPR003340 GO:0003677(InterPro)
Mch3g0018 870 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Mch3g0018 870 Gene3D - 314 441 IPR015300 -
Mch3g0018 870 Pfam CW-type Zinc Finger 579 622 IPR011124 GO:0008270(InterPro)
Mch3g0018 870 SUPERFAMILY DNA-binding pseudobarrel domain 333 437 IPR015300 -
Mch3g0018 870 MobiDBLite consensus disorder prediction 826 870 - -
Mch3g0018 870 MobiDBLite consensus disorder prediction 826 843 - -
Mch3g0018 870 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677(InterPro)
Mch3g0018 870 MobiDBLite consensus disorder prediction 257 277 - -
Mch3g0018 870 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 1 846 - -
Mch3g0018 870 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0018 Mch-Chr3:173512 Mch5g2005 Mch-Chr5:19717009 5.81E-275 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42977 PF02362 B3 3.50E-16 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0018 K09287 - csv:101214226 1368.99