Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0030 ATGGATTTTGAGAGCAGCAAATTGTGGGGGGTCTTGGTGTTTGTTTCATTGATAAGTTTGAGCTCCGACGGTTTATCCACAGACTACTACAAGAGCTCATGCCCCAAGTTGCTGTCCATTGTGCGACGTGAAGTTGTGAAAGCAGTGGGCAAAGAGTATCGAATGGGAGCCTCGCTCCTTCGCCTCCATTTCCACGACTGCTTTGTCAATGCATGGTGTGACGCGTCAGTGCTGCTGGATGACACGGCGAACTTCACGGGGGAAAAGACGGCTATCCCAAATAAAGATTCGTTGAGAGGGTTTGAAGTGATCGACAACATCAAAACGCTGGTGGAGGCTGCTTGCCCTTCCGTGGTTTCATGTGCTGATATTCTGTCGATTGCAGCCCGAGACTCGGTTGTGGCACTTGGGGGGCCTTCGTGGGCTGTTGGGCTGGGCCGGATGGACTCAACCACAGCCAGCTTCGACAGTGCCAACAACGACCTCCCATCGCCATTCTTGGACCTTCCCGATCTCATCTCTGCCTTCTCCAACAAAGGCTTCTCCACAAAAGAATTGGTCGCCCTCTCAGGATCCCACACCATAGGCCAAGCGAGGTGCTCGATGTTCCGAGTAAGGGCCCATAACGAGACCAACATCGACTCTGAGTTCGCAGCTTCTCTAAGATCCAACTGCCCATTCTCCGGAGACGACACCAACAGCAGCAGCAGCCTTTCGTCTCTGGACCTCAAAACCCCATCGTTGTTCGACAACTATTTCTTCAAGAACTTGATTCAGAACAAAGGCCTTCTTCACTCCGACCAAGCCCTCTTCAGCAACGCCTCCGCCGACTCTCACGTCACCACTTACAGCTCCGATTCCGACGCTTTCTTCTCCGACTTCGCCGCCGCCATGGTCAAGATGTCCGAACTCTCCCCACCCTCCGGAGCCGCCGCCCAGATCCGTTCCGACTGCCGCAAAATCAACTGA 969 53.77 MDFESSKLWGVLVFVSLISLSSDGLSTDYYKSSCPKLLSIVRREVVKAVGKEYRMGASLLRLHFHDCFVNAWCDASVLLDDTANFTGEKTAIPNKDSLRGFEVIDNIKTLVEAACPSVVSCADILSIAARDSVVALGGPSWAVGLGRMDSTTASFDSANNDLPSPFLDLPDLISAFSNKGFSTKELVALSGSHTIGQARCSMFRVRAHNETNIDSEFAASLRSNCPFSGDDTNSSSSLSSLDLKTPSLFDNYFFKNLIQNKGLLHSDQALFSNASADSHVTTYSSDSDAFFSDFAAAMVKMSELSPPSGAAAQIRSDCRKIN 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 330819 332290 - MC03g0023 Mch3g0030 682933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0030 322 SUPERFAMILY Heme-dependent peroxidases 24 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 CDD secretory_peroxidase 24 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Mch3g0030 322 ProSiteProfiles Plant heme peroxidase family profile. 24 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 FunFam Peroxidase 163 301 - -
Mch3g0030 322 Gene3D Peroxidase, domain 2 163 301 - -
Mch3g0030 322 Pfam Peroxidase 41 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 Gene3D - 28 319 - -
Mch3g0030 322 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Mch3g0030 322 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Mch3g0030 322 PANTHER PEROXIDASE 72-RELATED 12 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch3g0030 322 FunFam Peroxidase 28 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1599 Mch-Chr1:17139790 Mch3g0030 Mch-Chr3:330819 1.19E-17 dispersed
Mch3g0030 Mch-Chr3:330819 Mch4g2473 Mch-Chr4:25560499 2.51E-119 dispersed
Mch3g0029 Mch-Chr3:308572 Mch3g0030 Mch-Chr3:330819 1.59E-100 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0030 K00430 - csv:101221157 488.419