Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch3g0043 | ATGGCCTCCTCTTCCGGGAGCTTAGAAACCTCTGCAAATTCACACCCTCCCTTCACTTTCTCCACACACCCTTTCATGACAACTTCTTACTCTGATCTCCTCGCCTCCGGCACCAGCGATCCCCCCTCCTCCGCCGCCCCCCACCGGACCTTCTCCGGCACCGGCACCGGCACCGGCGTCCCTAAGTTCAAATCCCTCCCTCCTCCTTCTCTCCCCCTCTCCCCCCCTCCTCTCTCTCCTTCTTCCTTCTTCGCCATCCCTCCCGGCCTCAGCCCCGCCGAGCTCCTCGATTCCCCTGTTCTCCTCAGCGCTTCTCACGTTCTGCCGTCGCCGACCACCGGGACTTTCCCGTCTCAGGCGTTGAATTGGAAGTACGGTCACCAGAATATCAAAGAAGAGAACAAATACTTGTCGAATTTCTCGTTCCAAACTCAATCCTCCAAGCCGCAGCCGCCGCCGCTGGCGACATCTTCTGCTATGTTTCAGCCTTCTTCCAACACGGTTCCGACGACTCAGGGGTGGAGTTTCCAAGAACAGAGCAAGAAACATGATGGTTATTCGTCGGAGAAGAATATGGTGAAGCCGGAGTTCGGATCTATGCAGAGCTTCTCGCCGGAATATGGGGTCGTGCAAAAGCAGAGCCAGAACGGCGGCGGGGAGCAGCTGCAGTCGGAGTACGGCAACAATTACGCGCAGCAATCTCAGACGGTGAACCGGAGGTCCGACGACGGCTACAACTGGAGAAAATACGGCCAAAAACAGGTCAAAGGAAGCGAAAATCCGAGAAGCTACTACAAATGCACGTTCCCGAATTGCCCAACAAAGAAGAAAGTGGAAAGATCGTTAGATGGACAGATCACTGAAATTGTTTACAAAGGCAGCCACAACCATCCGAAGCCTCAATCCACGAGGAGATCATCGCTGTCGTCGGGCGGTGGTTCCTCCCACTCAATGACGGCTTCAAATCCCGCCGCCAACGACATCGCCGACCAGTCATATGCAACCCAAGGCAGCGGGCAGTTCGACGGCGTCGCGACGCCGGAGAATTCCTCGATCTCGATCGGGGACGACGACTTCGATCGGAGCTCCCAGAAGAGCAAATCCGGAGGGGGGGACGATTTCGACGAGGACGAGCCGGAGGCAAAGAGATGGAGGAGGGAAGGAGACAACAACGAAGGGATTTCGGCAGCGGGTAGCCGGACGGTGAGAGAGCCGAGAGTCGTCGTCCAAACCACGAGCGACATCGACATTCTCGATGACGGTTACCGGTGGAGAAAGTACGGCCAGAAAGTGGTGAAGGGAAACCCAAATCCGAGGAGTTACTACAAATGCACCAACCCAGGATGCCCGGTGAGAAAGCATGTGGAGCGAGCATCGCATGATCTGAGGGCAGTGATCACCACCTACGAAGGCAAGCACAACCACGATGTCCCACCGGCGCGTGGCAGCGGAAGCCATTCCCTCAGCCGTCCATTCCTCAACAACGACCATCCCGCAGCCGCAATCAGGCCATCCGCGGTGGCCCATCAGCCAAACAACGGCGGAAACAGCCTTGTGCACGGTCTCCAGACGCCATTTACGCTAGAAATGGTGCAGAATCCCAACGGATTCTCATTCCCGGAATTTGGAAACTCCATGGGAATGGGAATGGGATCTTACACGAACCAAACACAGCCGAATGACAATTTGTTCGCCAGAGCCAAAGAAGAACCAAGGGAACATGACATGTTCATCCAATCTCTGCTATGTTGA | 1752 | 55.88 | MASSSGSLETSANSHPPFTFSTHPFMTTSYSDLLASGTSDPPSSAAPHRTFSGTGTGTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGTFPSQALNWKYGHQNIKEENKYLSNFSFQTQSSKPQPPPLATSSAMFQPSSNTVPTTQGWSFQEQSKKHDGYSSEKNMVKPEFGSMQSFSPEYGVVQKQSQNGGGEQLQSEYGNNYAQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSGGGSSHSMTASNPAANDIADQSYATQGSGQFDGVATPENSSISIGDDDFDRSSQKSKSGGGDDFDEDEPEAKRWRREGDNNEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFLNNDHPAAAIRPSAVAHQPNNGGNSLVHGLQTPFTLEMVQNPNGFSFPEFGNSMGMGMGSYTNQTQPNDNLFARAKEEPREHDMFIQSLLC | 583 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 448332 | 451970 | + | MC03g0036 | Mch3g0043 | 682946 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch3g0043 | 583 | SUPERFAMILY | WRKY DNA-binding domain | 410 | 478 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0043 | 583 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 159 | 497 | IPR044810 | GO:0003700(InterPro) | |
| Mch3g0043 | 583 | MobiDBLite | consensus disorder prediction | 31 | 79 | - | - | |
| Mch3g0043 | 583 | FunFam | WRKY transcription factor | 231 | 301 | - | - | |
| Mch3g0043 | 583 | Pfam | WRKY DNA -binding domain | 242 | 298 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0043 | 583 | Pfam | WRKY DNA -binding domain | 419 | 476 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0043 | 583 | Gene3D | WRKY domain | 226 | 301 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0043 | 583 | MobiDBLite | consensus disorder prediction | 142 | 189 | - | - | |
| Mch3g0043 | 583 | MobiDBLite | consensus disorder prediction | 142 | 181 | - | - | |
| Mch3g0043 | 583 | ProSiteProfiles | WRKY domain profile. | 242 | 300 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0043 | 583 | FunFam | WRKY transcription factor 33 | 405 | 471 | - | - | |
| Mch3g0043 | 583 | ProSiteProfiles | WRKY domain profile. | 413 | 478 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0043 | 583 | MobiDBLite | consensus disorder prediction | 291 | 401 | - | - | |
| Mch3g0043 | 583 | SUPERFAMILY | WRKY DNA-binding domain | 240 | 300 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0043 | 583 | SMART | WRKY_cls | 418 | 477 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0043 | 583 | SMART | WRKY_cls | 241 | 299 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0043 | 583 | MobiDBLite | consensus disorder prediction | 65 | 79 | - | - | |
| Mch3g0043 | 583 | MobiDBLite | consensus disorder prediction | 354 | 390 | - | - | |
| Mch3g0043 | 583 | MobiDBLite | consensus disorder prediction | 296 | 353 | - | - | |
| Mch3g0043 | 583 | Gene3D | WRKY domain | 405 | 471 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Mch3g0043 | 583 | MobiDBLite | consensus disorder prediction | 31 | 59 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch2g0805 | Mch-Chr2:5538629 | Mch3g0043 | Mch-Chr3:448332 | 3.10E-75 | dispersed | |
| Mch3g0043 | Mch-Chr3:448332 | Mch6g1412 | Mch-Chr6:12571243 | 5.70E-75 | dispersed | |
| Mch3g0043 | Mch-Chr3:448332 | Mch9g2095 | Mch-Chr9:21929943 | 9.27E-76 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42980 | PF03106 | WRKY | 3.60E-25 | CL0274 | Mch | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch3g0043 | K13424 | - | csv:101207158 | 904.82 |