Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0050 GAGGAGAAGCTGCTGGCTATGGCGCGCCACATAGCCAAGACCATGGGCCGTAACGAGTCCATGGCCGATGATATTTTCCAGATTTTCTCCAATTTCGATGCTAGGTTTTCCCTCGATAAGTTGTCTGATAAGGTCGATGAGGTTGATCCCAGAGGCTCCGCCGCCTTGCACCGCACTCTCAAGTCTCTCGACCGCCGGATCTCCCAATACTTGGCCGCCGACCACCCGATTTGGGCCGACTCCGCCGATTCCTCTGCTTTTCTCGACGCCATCGATGAGTTGATGGCCACCATTAGGGACTGGACCCCCATGGCCAGGGATAACACCGTCGGCTCCTACCTCGCCCGCGCCGACGATCTGATGCACCAGGCGATGTTCCGCGTCGATGAAGAGTTCCGCTCGTTGATGGAGCGCGGTGGTGAGTCTTTTGAACTCACTCGCCATTTCAGGAACGGCGAGTCAACGGGCGATTTCTCCTTCGATTCTGAAGAGGATGAGGAAGCTACGGAGGGGATTCTTGGCGACTGCGACGGTCACCAGATTCCGGTGGCGCAGCCGGTTACGGACTACAACATTGTGATCGATGCGCTCCCGTCGGGGACTCTCAGCGATCTCCACGAGATAGCGAAGCGTATGGTGGCGGCCGGGTTCGAGAAGGAGTGTTCGCACGCTTACAGTAGCTGCAGGAGGGAGTTCCTGGAGGAGAGTCTTTCTAGGTTGGGGTTACAGAAGCTGAGCATCGATGAGGTTCAGAAATTGCCATGGCAGGACCTTGAGGAGGAGATTGAGCGCTGGATGAAGGCGATTACCGTCTCCCTCCGAATCCTCTTCCCAAGCGAAAGACGCCTCTGCGACCGCGTCTTCTTCGGCCTCTCCTCTGCCGCCCATCTCTCTTTCATGGACGTCTGCCGAGGATCAACGATTCAGCTATTGAATTTTGCAGATGCGGTAGCAATTGGCTCGCGCGCACCGGAACGGCTGTTCAAAATCCTCGACATGTTCGAGACCTTCAGAGACTTGATGCCGGAATTGGACTCGGTGTTTTCGGACCAGTACTGTTTATTGCTTAGAAACGAAGCAATTACAATCTGGAAAAGGTTGGGCCAAACAATCAAGGGGATCTTCATGGAGCTTGAGAATTTGATCCGTCGTGATCCTGCGAAAACTCCAGTGCCGGCCGGCGGGCTTCATCCAATTACTCGATATGTGATGAATTATCTACGAGCAGCCTGTCGGTCGCGGCTAACTCTGGAGCAAGTTTTCGAAGAAACCGCTCTTCCCTCCAAGGATTACACCAAGCTGGAGGACAGAGCAGCAGCATCGTCTTCGTTATCGGTTCAAATGGACTGGATTATGGAGCTTCTAGAGAGCAATTTAGAGGCGAAGTCGAAGATATACAAGGATCTTTCCTTAAGCTCTGTGTTTCTGATGAACAACGGCAGATACATTGTTCAGAAAGTGAAAGACAGTGAATTAGGATCACTTTTAGGCGACGATTGGATTCGAAAACACTCGGTGAAGAGCCGGCAATACCTCGGGAATTACCTGAAAAGCTCATGGAGCAAGGTGGTCGGAGTATTGAAAACGGACAGTGGCTCGTTAGCTCCAAGCGCCGCCACAATGAAAGAGAAGCTCAAATCATTCAACTTGCAGTTTGAAGAAATCTGCAAAACCCAATCCACATGGGTAATATTCGAGCATCAGCTCAGAGAGGAAGCAAGAATCTCGGTGGCCAAAATCCTGATTCCGGCCTACCAAAACTTCATTGCAAGGTACCAGAGTTTGCCGGAGTTGGCAAAGCGTACAGACCGGCATTTGAAGTACACGGCGGAGGACGTGGAAGCTCGGATCACCAAGTTGTTCGAAGGA 1869 52.43 EEKLLAMARHIAKTMGRNESMADDIFQIFSNFDARFSLDKLSDKVDEVDPRGSAALHRTLKSLDRRISQYLAADHPIWADSADSSAFLDAIDELMATIRDWTPMARDNTVGSYLARADDLMHQAMFRVDEEFRSLMERGGESFELTRHFRNGESTGDFSFDSEEDEEATEGILGDCDGHQIPVAQPVTDYNIVIDALPSGTLSDLHEIAKRMVAAGFEKECSHAYSSCRREFLEESLSRLGLQKLSIDEVQKLPWQDLEEEIERWMKAITVSLRILFPSERRLCDRVFFGLSSAAHLSFMDVCRGSTIQLLNFADAVAIGSRAPERLFKILDMFETFRDLMPELDSVFSDQYCLLLRNEAITIWKRLGQTIKGIFMELENLIRRDPAKTPVPAGGLHPITRYVMNYLRAACRSRLTLEQVFEETALPSKDYTKLEDRAAASSSLSVQMDWIMELLESNLEAKSKIYKDLSLSSVFLMNNGRYIVQKVKDSELGSLLGDDWIRKHSVKSRQYLGNYLKSSWSKVVGVLKTDSGSLAPSAATMKEKLKSFNLQFEEICKTQSTWVIFEHQLREEARISVAKILIPAYQNFIARYQSLPELAKRTDRHLKYTAEDVEARITKLFEG 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 528490 530358 - MC03g0039 Mch3g0050 682953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0050 623 PANTHER EXOCYST COMPLEX PROTEIN EXO70 47 623 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Mch3g0050 623 Gene3D Exocyst complex component Exo70 77 623 - -
Mch3g0050 623 Pfam Exocyst complex component Exo70 N-terminal 60 137 - -
Mch3g0050 623 SUPERFAMILY Cullin repeat-like 78 622 IPR016159 -
Mch3g0050 623 Pfam Exo70 exocyst complex subunit C-terminal 264 618 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Mch3g0050 623 FunFam Exocyst subunit Exo70 family protein 71 623 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0050 K07195 - - csv:101204511 1075.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0050 Mch-Chr3:528490 Mch4g1670 Mch-Chr4:19888351 2.75E-118 dispersed
Mch3g0050 Mch-Chr3:528490 Mch3g1347 Mch-Chr3:16160475 4.03E-122 transposed
Mch3g0050 Mch-Chr3:528490 Mch6g0064 Mch-Chr6:380659 3.14E-122 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1872 . 10 654 EXO70 exocyst subunit family AT5G03540 76.5 3.9e-285 977.2
Mch1g0977 . 1 637 EXO70 exocyst subunit family AT5G03540 70.1 8.2e-259 889.8
Mch1g0977 . 1 637 EXO70 exocyst subunit family AT5G52340 77.7 2.8e-288 987.6
Mch9g1872 . 1 654 EXO70 exocyst subunit family AT5G52340 74.0 6.0e-275 943.3
Mch1g0977 . 145 629 EXO70 exocyst subunit family AT5G52350 61.4 1.1e-169 593.6
Mch9g1872 . 147 654 EXO70 exocyst subunit family AT5G52350 59.1 3.2e-166 582.0
Mch3g0050 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 4.1e-244 840.9
Mch3g0050 . 1 622 EXO70 exocyst subunit family AT1G07000 51.4 1.4e-172 603.2
Mch5g0938 . 54 663 EXO70 exocyst subunit family AT5G13150 53.8 2.6e-180 629.0
Mch4g1670 . 68 671 EXO70 exocyst subunit family AT5G13990 53.6 4.8e-185 644.8
Mch8g1301 . 7 604 EXO70 exocyst subunit family AT1G72470 65.2 2.8e-216 748.4
Mch8g1301 . 4 602 EXO70 exocyst subunit family AT1G54090 62.3 1.2e-211 733.0
Mch8g1301 . 4 603 EXO70 exocyst subunit family AT3G14090 64.1 4.1e-220 761.1
Mch8g2403 . 10 664 EXO70 exocyst subunit family AT3G29400 50.1 3.4e-164 575.5
Mch6g0064 . 13 650 EXO70 exocyst subunit family AT5G50380 62.1 2.4e-229 792.0
Mch3g1347 . 21 659 EXO70 exocyst subunit family AT5G50380 62.6 2.2e-227 785.4
Mch8g0375 . 1 687 EXO70 exocyst subunit family AT4G31540 71.2 5.5e-290 993.4
Mch9g1604 . 34 576 EXO70 exocyst subunit family AT3G55150 50.2 2.3e-149 526.2
Mch5g1815 . 27 639 EXO70 exocyst subunit family AT3G09520 52.9 5.3e-175 611.3
Mch5g1814 . 27 638 EXO70 exocyst subunit family AT3G09520 52.9 7.7e-174 607.4
Mch2g0943 . 7 604 EXO70 exocyst subunit family AT5G59730 50.2 2.2e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009102 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 0 1 33