Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0089 ATGTCGGAATCGGCGGCGGCTTCCTGGTCCAGAACTAAGTTTGTCGTCGGAAAAGGAGCCTTTGGGACGGTCAGCGTCGGATTCAACCAATCCGGCGGCGGTCGGATTTTCGCGGTGAAGTCCGTGGAGCAGAGCATCGGATTTCGCCGTCAGATTGAGTCTCTGGAGAACGAAATTCGGATTCTCCGGTCGTTGGATTCTCCGTACGTGGTGGGATTTCTCGGCGATGACGTTTCCCACGAGTCTCCGACGGCGTCGTTTCGGAACCTCCACATGGAGTTTCTGCCGGGTGGCACCGTCGCTGACTTCCCCGCCGGCGCCGGAGACGAGAAGCTTTTACGGGCCCGGACGTGGTGCGTCGTCACGGCGTTGAATTACGTCCATTCCAGAGGAATCGTCCACTGCGATGTCAAGGGGAGGAATATTCTCGTCGGCCGGAATCCCAATTTCGTGAAGCTCGCCGATTTCGGCTCTGCGATTGAATTCTCCGGCGACGGGGACGCGTGTCGCGAGCGTGTGCTGCCACGTGGAAGTCCGCTGTGGATGGCGCCGGAGGTGGTCCGGGGGGAGTCGCAGGGGCCGGAATCGGACGTGTGGGCCCTCGGGTGTACGGTCATCGAAATGTTCACCGGGAGACCGGCGTGGGACGATTGCGCGGCCCACACGCTGACTCGGATCGGCTACTCGGACGAGTTGCCGGAGTTTCCGACTCGGTTGTCGGAAACCGGCCGGGATTTTCTCCGGAAGTGTCTCAGGAGAAAGCCGAGTGAACGGTGGAGCTGCGATCGGCTGCTGCAGCATCCATTTTTAGCGTCGGCCTCGCCGGAGATCGCCGTCGAGTCGTCCCCCCGGTGCGTGCTCGACTGGGTCAACGCCGATTTCGACGACGACGACGAGGAAGAGGCCATCTCCGGCGAAACCTCCGGCTCCGACTGCCGGAATAGTGAGATCTCCGTCAGGGACAGAATTGGGGAATTGAGTACAAGTGAATGGCCGAATTGGGCATCGGACGGGTGGTCGGCGGTGAGAGGCGTGGAGAGTGAAGCGGCGGCGCCGGCCAGGTGCGACGGCGAAGAAGGGGAAGGGACAGATTGGGAATATGTGAATTTGAGGGGGAGAGAAGTGGAAACGGAGGGGACAAGTTCGGAATATTGGGGAATTGTAAAGGACAATCACGGAAGATTAAATGCTGAATATTCAAATCCTGGCGGCATGGAGTTTCGGGAGCGGCCACGTAATAATTGCCAGATCATGTGCGGCGGCGGTGGCGGTGGATCAAGCGGCGGGCTGCGGGCGTTTGAAATTTGCATATATTCAATTGAATTGATATTATGTTATTATCGGAAAATATTAATGAAGCAATTGGTATTATTTGCGAATTACACTTTACCTTTCTTC 1398 57.58 MSESAAASWSRTKFVVGKGAFGTVSVGFNQSGGGRIFAVKSVEQSIGFRRQIESLENEIRILRSLDSPYVVGFLGDDVSHESPTASFRNLHMEFLPGGTVADFPAGAGDEKLLRARTWCVVTALNYVHSRGIVHCDVKGRNILVGRNPNFVKLADFGSAIEFSGDGDACRERVLPRGSPLWMAPEVVRGESQGPESDVWALGCTVIEMFTGRPAWDDCAAHTLTRIGYSDELPEFPTRLSETGRDFLRKCLRRKPSERWSCDRLLQHPFLASASPEIAVESSPRCVLDWVNADFDDDDEEEAISGETSGSDCRNSEISVRDRIGELSTSEWPNWASDGWSAVRGVESEAAAPARCDGEEGEGTDWEYVNLRGREVETEGTSSEYWGIVKDNHGRLNAEYSNPGGMEFRERPRNNCQIMCGGGGGGSSGGLRAFEICIYSIELILCYYRKILMKQLVLFANYTLPFF 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1034432 1035829 - MC03g0072 Mch3g0089 682992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0089 466 Gene3D Transferase(Phosphotransferase) domain 1 8 317 - -
Mch3g0089 466 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0089 466 SUPERFAMILY Protein kinase-like (PK-like) 15 292 IPR011009 -
Mch3g0089 466 ProSitePatterns Protein kinases ATP-binding region signature. 16 40 IPR017441 GO:0005524(InterPro)
Mch3g0089 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch3g0089 466 CDD STKc_MAPKKK 8 270 - -
Mch3g0089 466 ProSiteProfiles Protein kinase domain profile. 10 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch3g0089 466 FunFam Serine threonine protein kinase putative 7 323 - -
Mch3g0089 466 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 271 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch3g0089 466 SMART serkin_6 10 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1740 Mch-Chr1:17944291 Mch3g0089 Mch-Chr3:1034432 1.70E-59 dispersed
Mch3g0089 Mch-Chr3:1034432 Mch4g0251 Mch-Chr4:1645099 4.27E-58 dispersed
Mch3g0089 Mch-Chr3:1034432 Mch2g0539 Mch-Chr2:3790771 1.17E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77239 PF00069 Pkinase 3.40E-50 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0089 - - - 0.0