Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0090 ATGTCGGTTTCCGTTGCGGTTTCGAATTCGCCGGGATTCTCTCCGTCGTCGTCGATGTTCTGCAACAAGACGTCGATAATTTCTCCGGCGTCGGAGGCGCTGACGCTGACTCTGGCCCATCTGAAGTCGTCGCAGGCTTCGTCCCCTTCGTCCCCTTCTTCCCCTTTTCGGATTAGGTTTCCGAAGCCCCCTTCTGGGCTTTCCTCCGTTGCGACGGCGGCGGCGGCGGCGGCCTCCACGTCTTCTCCTTCGTCGGTGTCCCCCACCGCGATCCTGAAGAGGAAGAGACCGGCCAGGCTGGATATTCCGTTGACGCCGTTGAGTTTTGGGGCTTCGATTCAGCCGTCACCGTCGTCGTTCAGGGAGGTGGTGGAGGCCGAGAGAGATGGCTATTCTGTGTACTGCAAGAGAGGGAGGAGGAGAATCGCCATGGAAGATCGCTATTCCGCCGCCGTTGATCTCCAAGGACACTCTAAAGAGGCGTTTTTTGGTGTATTTGATGGACATGGGGGTGCAAAAGCTGCAGAATTTGCAGCAAATAACTTGGAGAGAAACATTTTGAATGAACTGGAAAGAATGTCTGAAAACGAGAGAGATTTTGAGCAGGCCATTAAGCATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGAATCACCTCGGTGGCTCCTGTTGTGTGACAGCCCTAATCCAGAAAGGCAACCTCGTCATCTCCAACGCTGGTGACTGCCGTGCCGTTCTCAGCAGCGAGGGCGTCGCAGAGGCCATCACCTCCGACCACCGCCCAGCCCGCAAAGACGAAAGGCACAGAATCGAGTCCACGGGTGGATATGTTGATCTGTGCAATGGCGTTTGGAGAGTCCAGGGATCTCTGGCTGTAACAAGAGGGATTGGGGATGCCCACCTCAAACAATGGGTGATAGCCGAGCCCGAGACGAGGTCGTTCCCGATCGAGCCTCGACACGAGTTCTTGATCCTGGCCTCGGACGGGTTATGGGAAACAGTAGGGAATCAAGAAGCAGTGGACATTGCCCATCCATTGATGGTGGGGATTGAGAAGGCAGAGCCATTGGTGGCCTGCAAAAAGCTTGTGGAGCTATCTCTTGCAAGAGGCTCAGTTGATGACATTAGTGTAATACTAATTCAATTGGCTAACTTCATCTAA 1167 54.24 MSVSVAVSNSPGFSPSSSMFCNKTSIISPASEALTLTLAHLKSSQASSPSSPSSPFRIRFPKPPSGLSSVATAAAAAASTSSPSSVSPTAILKRKRPARLDIPLTPLSFGASIQPSPSSFREVVEAERDGYSVYCKRGRRRIAMEDRYSAAVDLQGHSKEAFFGVFDGHGGAKAAEFAANNLERNILNELERMSENERDFEQAIKHGYLTTDSDFLKENHLGGSCCVTALIQKGNLVISNAGDCRAVLSSEGVAEAITSDHRPARKDERHRIESTGGYVDLCNGVWRVQGSLAVTRGIGDAHLKQWVIAEPETRSFPIEPRHEFLILASDGLWETVGNQEAVDIAHPLMVGIEKAEPLVACKKLVELSLARGSVDDISVILIQLANFI 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1069196 1071582 - MC03g0073 Mch3g0090 682993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0090 388 SUPERFAMILY PP2C-like 130 385 IPR036457 -
Mch3g0090 388 SMART PP2C_SIG_2 139 384 IPR001932 -
Mch3g0090 388 Coils Coil 179 199 - -
Mch3g0090 388 SMART PP2C_4 123 382 IPR001932 -
Mch3g0090 388 Pfam Protein phosphatase 2C 135 377 IPR001932 -
Mch3g0090 388 PANTHER PROTEIN PHOSPHATASE 121 382 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch3g0090 388 CDD PP2Cc 130 384 IPR001932 -
Mch3g0090 388 ProSiteProfiles PPM-type phosphatase domain profile. 130 384 IPR001932 -
Mch3g0090 388 FunFam probable protein phosphatase 2C 25 123 387 - -
Mch3g0090 388 ProSitePatterns PPM-type phosphatase domain signature. 162 170 IPR000222 GO:0043169(InterPro)
Mch3g0090 388 Gene3D - 131 387 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0090 Mch-Chr3:1069196 Mch9g1452 Mch-Chr9:16876043 1.60E-122 dispersed
Mch3g0090 Mch-Chr3:1069196 Mch6g0853 Mch-Chr6:5919257 2.75E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0090 K17506 - csv:101207841 620.928