Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch3g0200 | ATGATTCCTCTTCTCTTATTCTCCTCCTTCTTCCTCCTCCTCCTCCTCCAATGGCGCCACCCGAGGCACAAACTCCTCCCTCCCGGCTCCGTGGGCTGGCCTTACATCGGCGAAACCTTCAAACTCTACACCCAAAACCCCAACTCCTTCTTCTCCGTCAGGCAAAAACGATACGGGGACGTTTTTAAGACGCATATATTGGGGTGTCCATGTGTGATGATATCAAGCCCAGAGGCAGCAAGAGTGGTGCTTGTGAGCAAGGCTCATCTTTTCAAGCCCACATATCCACCAAGCAAAGAGAAAATGATTGGCCCTGAGGCATTGTTTTTCCACCAAGGCTCCTACCATTCATGCCTTAAGAAGCTGGTCCAAGCTTCATTTTTGCCCTCTGCCATCAGACCATCTGTCTCCCAAATTGAGGCCATTGTTCTTAGGCTTCTCCCCTCTTGGAACAACTCCCAACAAATCAACACCTTGCACCAAATGAAAAGGTTTGCTTTCGATGTCGCGATGATCTCGGCTTTTGGAGAACAACAAGAATTGGAAATCGACAGAATCAAACATCTCTACCAATGCCTCGAGAAAGGCTACAATTCAATGCCTATCGATCTCCCCGGAACTCCTTTTCGCAAAGCTATGAAGGCAAGGAAGTTGTTGAGTGAGACATTGGGGAGACTGATAGAGAAGCGACGGCGGAGGAAGGAGCACGGCGGCGGGCTGCTCGGGGTGCTATTGGGTGGCGGTAGCGACGGCGGAGATGAGGCGGAGAAAAACAAGCTGAGTGATTCACAAATAGCTGATAATATAATAGGAGTAATATTTGCAGCTCAAGACACGACTGCTAGTGTGTTAACATGGATTCTCAAGTACTTGCACGACAATCACCATCTTCTCGATGCAGTTAAGAAGGAGCAGGAGGCGATTTTTCAACGCAAACTCTGCCAAGGGAACCGTAACCTTACGTGGGATGATACCAGGCGCATGCCCTTCACCACACGGGTGATACAAGAAACCCTAAGAACAGCAAGTGTTGTGTCATTCACATTTAGGGAAGCAGTAGAAGACGTGGAGTTTGAAGGGTATTTAATCCCAAGAGGATGGAAAGTTCTTCCACTCTTCAGAACCATTCATCACTCTGCAGATTTCTTTCCTCATCCCGAGAAATTTGACCCTTCAAGATTCGAGGTGCCACCGAGACCAAACACGTACCTGCCCTTTGGAAATGGAGTGCACTCCTGTCCAGGCAGTGAGCTGGCTAAGCTTGAAATGCTTGTCCTCCTTCACCACCTCACCATTACTTACAGATGGCAAGTGGTGGGAGAGGAATCTGGGATACAGTACGGGCCATTTCCTGTGCCAAAGGGTGGTTTGCCCATAAAAGTAATCCCAAGGAAGAGGAAGATTGCTTCCTAG | 1413 | 48.76 | MIPLLLFSSFFLLLLLQWRHPRHKLLPPGSVGWPYIGETFKLYTQNPNSFFSVRQKRYGDVFKTHILGCPCVMISSPEAARVVLVSKAHLFKPTYPPSKEKMIGPEALFFHQGSYHSCLKKLVQASFLPSAIRPSVSQIEAIVLRLLPSWNNSQQINTLHQMKRFAFDVAMISAFGEQQELEIDRIKHLYQCLEKGYNSMPIDLPGTPFRKAMKARKLLSETLGRLIEKRRRRKEHGGGLLGVLLGGGSDGGDEAEKNKLSDSQIADNIIGVIFAAQDTTASVLTWILKYLHDNHHLLDAVKKEQEAIFQRKLCQGNRNLTWDDTRRMPFTTRVIQETLRTASVVSFTFREAVEDVEFEGYLIPRGWKVLPLFRTIHHSADFFPHPEKFDPSRFEVPPRPNTYLPFGNGVHSCPGSELAKLEMLVLLHHLTITYRWQVVGEESGIQYGPFPVPKGGLPIKVIPRKRKIAS | 470 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2628131 | 2635143 | + | MC03g0147 | Mch3g0200 | 683103 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch3g0200 | 470 | PRINTS | E-class P450 group I signature | 264 | 281 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | PRINTS | E-class P450 group I signature | 403 | 413 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | PRINTS | E-class P450 group I signature | 284 | 310 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | PRINTS | E-class P450 group I signature | 332 | 350 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | PRINTS | E-class P450 group I signature | 55 | 74 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | PRINTS | E-class P450 group I signature | 372 | 396 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | PRINTS | E-class P450 group I signature | 413 | 436 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | CDD | CYP90-like | 54 | 463 | - | - | |
| Mch3g0200 | 470 | PANTHER | CYTOCHROME P450 26 | 26 | 434 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Mch3g0200 | 470 | Gene3D | Cytochrome P450 | 19 | 463 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | Pfam | Cytochrome P450 | 27 | 440 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | SUPERFAMILY | Cytochrome P450 | 19 | 464 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 406 | 415 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Mch3g0200 | 470 | PRINTS | P450 superfamily signature | 333 | 344 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | PRINTS | P450 superfamily signature | 413 | 424 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | PRINTS | P450 superfamily signature | 275 | 292 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | PRINTS | P450 superfamily signature | 404 | 413 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch3g0200 | 470 | FunFam | Abscisic acid 8 | 17 | 463 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch10g0943 | Mch-Chr10:6658693 | Mch3g0200 | Mch-Chr3:2628131 | 7.46E-198 | dispersed | |
| Mch3g0200 | Mch-Chr3:2628131 | Mch8g0687 | Mch-Chr8:4931201 | 3.34E-173 | dispersed | |
| Mch3g0200 | Mch-Chr3:2628131 | Mch4g0691 | Mch-Chr4:4614509 | 1.17E-176 | transposed | |
| Mch3g0200 | Mch-Chr3:2628131 | Mch11g0286 | Mch-Chr11:1784827 | 1.60E-176 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch3g0200 | K09843 | - | csv:101216531 | 807.364 |