Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0205 ATGGGAGAGGAGGTGAAGATGGGGGAATACGAGAGCGGTGGCGGTGAGGATGATGATGGTGGTTCTGAGGAGCGGGTGTTTGAATGGGAGACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACGTTGATCCCGCCGGAGCTTGCCTCCGCATTCAGTATTTCCACCGGGCCCTGTCGGACGCTCATGGATGTCAATCGGGCGTCGCAGAATACTCTATCGAATCTCCGCGGGTTCCAATCCCAAGCGTTTTCGTCGAATAATTTCAAGTCGTTCAACGATGATCGGACCCGGGATCATGATCCGATGGTGGTTGAGGGAGATGAGGGTTCGGATTCTAGAAAATTGAGGAAGGTTGATTGTGCGGAAGAGGCTGATTCGGCCCTCCGGACTGATAATTCGATGGATGATCCATCGGCTCGGACCTTGAAGAGACCGAGGCTTGTTTGGACGCCTCAATTACACAAGCGGTTCGTTGACGTTGTTGCTCATCTTGGAATTAAGAACGCGGTGCCTAAAACTATTATGCAGTTGATGAACGTGGAGGGATTGACTCGCGAGAACGTTGCGAGTCATCTTCAGAAATATAGACTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAGGGTCCGTCGTCGCCGGACCGGCTCTTCGCGTCCACGCCCGTACCCCAGAGCTTGCACGAGTCTACCAACACTGCCCACTCCAATGGAAATGGGCATTTGCCGGTTCCGACTCCGATGCCGTATGGACCGCCGATGATGCCTATGCCGGTGCTTGGCATGGCCGCGCCTGGTCATGCTCACAGTTATATGGGTATGCCTGTCACTCATCCGGGAACCGCACAGGGATACCATGGCTTCGAAACGCATCCCTATAATATGATGCATCAGAGAGATTGGTCGGGAAGCAAATACGCCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAATACTAATGATAAGTGA 984 53.25 MGEEVKMGEYESGGGEDDDGGSEERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQSQAFSSNNFKSFNDDRTRDHDPMVVEGDEGSDSRKLRKVDCAEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRLFASTPVPQSLHESTNTAHSNGNGHLPVPTPMPYGPPMMPMPVLGMAAPGHAHSYMGMPVTHPGTAQGYHGFETHPYNMMHQRDWSGSKYASIVPYPHPHVPPNTNDK 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2662966 2666266 + MC03g0151 Mch3g0205 683108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0205 327 MobiDBLite consensus disorder prediction 92 115 - -
Mch3g0205 327 NCBIfam myb-like DNA-binding domain, SHAQKYF class 149 201 IPR006447 GO:0003677(InterPro)
Mch3g0205 327 MobiDBLite consensus disorder prediction 95 115 - -
Mch3g0205 327 MobiDBLite consensus disorder prediction 208 243 - -
Mch3g0205 327 FunFam Two-component response regulator 144 207 - -
Mch3g0205 327 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 19 281 IPR044841 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Mch3g0205 327 MobiDBLite consensus disorder prediction 1 27 - -
Mch3g0205 327 Pfam Myb-like DNA-binding domain 151 200 IPR001005 -
Mch3g0205 327 MobiDBLite consensus disorder prediction 207 249 - -
Mch3g0205 327 Gene3D - 145 207 - -
Mch3g0205 327 SUPERFAMILY Homeodomain-like 145 205 IPR009057 -
Mch3g0205 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 204 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0205 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0880 Mch-Chr2:5993504 Mch3g0205 Mch-Chr3:2662966 6.69E-79 dispersed
Mch3g0205 Mch-Chr3:2662966 Mch5g1325 Mch-Chr5:14125354 5.63E-42 dispersed
Mch3g0205 Mch-Chr3:2662966 Mch7g1214 Mch-Chr7:15730654 4.20E-23 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch8g0732 . 15 150 G2-like Transcription Factor Family AT5G42630 62.8 8.9e-40 160.6
Mch11g0241 . 10 152 G2-like Transcription Factor Family AT5G42630 55.2 9.2e-37 150.6
Mch8g3114 . 12 488 G2-like Transcription Factor Family AT2G03500 50.3 2.1e-90 329.7
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT1G25550 58.2 7.6e-57 217.6
Mch9g1987 . 19 253 G2-like Transcription Factor Family AT1G25550 53.8 6.2e-51 198.0
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT3G25790 50.6 2.3e-39 159.5
Mch3g0205 . 1 289 G2-like Transcription Factor Family AT3G46640 50.2 3.5e-61 232.3
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT5G05090 57.4 1.3e-74 276.6
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT5G05090 54.6 9.5e-73 270.4
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT4G13640 56.2 2.9e-62 235.7
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch5g1160 . 35 267 G2-like Transcription Factor Family AT1G69580 50.8 2.2e-42 169.9
Mch4g0013 . 1 360 G2-like Transcription Factor Family AT1G79430 51.8 1.3e-72 270.4
Mch5g0198 . 31 209 G2-like Transcription Factor Family AT1G79430 56.8 1.1e-39 161.0
Mch1g1664 . 82 325 G2-like Transcription Factor Family AT2G01060 55.2 6.5e-57 217.6
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT3G10760 63.2 4.7e-93 338.2
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT3G10760 58.3 8.8e-84 307.4
Mch5g1325 . 1 193 G2-like Transcription Factor Family AT2G40970 61.6 3.2e-62 235.3
Mch1g0471 . 1 202 G2-like Transcription Factor Family AT2G40970 61.0 3.0e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001910 1 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 3 2 2 2 1 2 2 6 4 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42985 PF00249 Myb_DNA-binding 1.30E-08 CL0123 Mch TF