Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g0205 | ATGGGAGAGGAGGTGAAGATGGGGGAATACGAGAGCGGTGGCGGTGAGGATGATGATGGTGGTTCTGAGGAGCGGGTGTTTGAATGGGAGACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACGTTGATCCCGCCGGAGCTTGCCTCCGCATTCAGTATTTCCACCGGGCCCTGTCGGACGCTCATGGATGTCAATCGGGCGTCGCAGAATACTCTATCGAATCTCCGCGGGTTCCAATCCCAAGCGTTTTCGTCGAATAATTTCAAGTCGTTCAACGATGATCGGACCCGGGATCATGATCCGATGGTGGTTGAGGGAGATGAGGGTTCGGATTCTAGAAAATTGAGGAAGGTTGATTGTGCGGAAGAGGCTGATTCGGCCCTCCGGACTGATAATTCGATGGATGATCCATCGGCTCGGACCTTGAAGAGACCGAGGCTTGTTTGGACGCCTCAATTACACAAGCGGTTCGTTGACGTTGTTGCTCATCTTGGAATTAAGAACGCGGTGCCTAAAACTATTATGCAGTTGATGAACGTGGAGGGATTGACTCGCGAGAACGTTGCGAGTCATCTTCAGAAATATAGACTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAGGGTCCGTCGTCGCCGGACCGGCTCTTCGCGTCCACGCCCGTACCCCAGAGCTTGCACGAGTCTACCAACACTGCCCACTCCAATGGAAATGGGCATTTGCCGGTTCCGACTCCGATGCCGTATGGACCGCCGATGATGCCTATGCCGGTGCTTGGCATGGCCGCGCCTGGTCATGCTCACAGTTATATGGGTATGCCTGTCACTCATCCGGGAACCGCACAGGGATACCATGGCTTCGAAACGCATCCCTATAATATGATGCATCAGAGAGATTGGTCGGGAAGCAAATACGCCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAATACTAATGATAAGTGA | 984 | 53.25 | MGEEVKMGEYESGGGEDDDGGSEERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQSQAFSSNNFKSFNDDRTRDHDPMVVEGDEGSDSRKLRKVDCAEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRLFASTPVPQSLHESTNTAHSNGNGHLPVPTPMPYGPPMMPMPVLGMAAPGHAHSYMGMPVTHPGTAQGYHGFETHPYNMMHQRDWSGSKYASIVPYPHPHVPPNTNDK | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2662966 | 2666266 | + | MC03g0151 | Mch3g0205 | 683108 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g0205 | 327 | MobiDBLite | consensus disorder prediction | 92 | 115 | - | - | |
Mch3g0205 | 327 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 149 | 201 | IPR006447 | GO:0003677(InterPro) | |
Mch3g0205 | 327 | MobiDBLite | consensus disorder prediction | 95 | 115 | - | - | |
Mch3g0205 | 327 | MobiDBLite | consensus disorder prediction | 208 | 243 | - | - | |
Mch3g0205 | 327 | FunFam | Two-component response regulator | 144 | 207 | - | - | |
Mch3g0205 | 327 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 19 | 281 | IPR044841 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Mch3g0205 | 327 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Mch3g0205 | 327 | Pfam | Myb-like DNA-binding domain | 151 | 200 | IPR001005 | - | |
Mch3g0205 | 327 | MobiDBLite | consensus disorder prediction | 207 | 249 | - | - | |
Mch3g0205 | 327 | Gene3D | - | 145 | 207 | - | - | |
Mch3g0205 | 327 | SUPERFAMILY | Homeodomain-like | 145 | 205 | IPR009057 | - | |
Mch3g0205 | 327 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 153 | 204 | IPR017930 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0880 | Mch-Chr2:5993504 | Mch3g0205 | Mch-Chr3:2662966 | 6.69E-79 | dispersed | |
Mch3g0205 | Mch-Chr3:2662966 | Mch5g1325 | Mch-Chr5:14125354 | 5.63E-42 | dispersed | |
Mch3g0205 | Mch-Chr3:2662966 | Mch7g1214 | Mch-Chr7:15730654 | 4.20E-23 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42985 | PF00249 | Myb_DNA-binding | 1.30E-08 | CL0123 | Mch | TF |
Pathway information
