Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0205 ATGGGAGAGGAGGTGAAGATGGGGGAATACGAGAGCGGTGGCGGTGAGGATGATGATGGTGGTTCTGAGGAGCGGGTGTTTGAATGGGAGACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACGTTGATCCCGCCGGAGCTTGCCTCCGCATTCAGTATTTCCACCGGGCCCTGTCGGACGCTCATGGATGTCAATCGGGCGTCGCAGAATACTCTATCGAATCTCCGCGGGTTCCAATCCCAAGCGTTTTCGTCGAATAATTTCAAGTCGTTCAACGATGATCGGACCCGGGATCATGATCCGATGGTGGTTGAGGGAGATGAGGGTTCGGATTCTAGAAAATTGAGGAAGGTTGATTGTGCGGAAGAGGCTGATTCGGCCCTCCGGACTGATAATTCGATGGATGATCCATCGGCTCGGACCTTGAAGAGACCGAGGCTTGTTTGGACGCCTCAATTACACAAGCGGTTCGTTGACGTTGTTGCTCATCTTGGAATTAAGAACGCGGTGCCTAAAACTATTATGCAGTTGATGAACGTGGAGGGATTGACTCGCGAGAACGTTGCGAGTCATCTTCAGAAATATAGACTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAGGGTCCGTCGTCGCCGGACCGGCTCTTCGCGTCCACGCCCGTACCCCAGAGCTTGCACGAGTCTACCAACACTGCCCACTCCAATGGAAATGGGCATTTGCCGGTTCCGACTCCGATGCCGTATGGACCGCCGATGATGCCTATGCCGGTGCTTGGCATGGCCGCGCCTGGTCATGCTCACAGTTATATGGGTATGCCTGTCACTCATCCGGGAACCGCACAGGGATACCATGGCTTCGAAACGCATCCCTATAATATGATGCATCAGAGAGATTGGTCGGGAAGCAAATACGCCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAATACTAATGATAAGTGA 984 53.25 MGEEVKMGEYESGGGEDDDGGSEERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQSQAFSSNNFKSFNDDRTRDHDPMVVEGDEGSDSRKLRKVDCAEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRLFASTPVPQSLHESTNTAHSNGNGHLPVPTPMPYGPPMMPMPVLGMAAPGHAHSYMGMPVTHPGTAQGYHGFETHPYNMMHQRDWSGSKYASIVPYPHPHVPPNTNDK 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2662966 2666266 + MC03g0151 Mch3g0205 683108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0205 327 MobiDBLite consensus disorder prediction 92 115 - -
Mch3g0205 327 NCBIfam myb-like DNA-binding domain, SHAQKYF class 149 201 IPR006447 GO:0003677(InterPro)
Mch3g0205 327 MobiDBLite consensus disorder prediction 95 115 - -
Mch3g0205 327 MobiDBLite consensus disorder prediction 208 243 - -
Mch3g0205 327 FunFam Two-component response regulator 144 207 - -
Mch3g0205 327 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 19 281 IPR044841 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Mch3g0205 327 MobiDBLite consensus disorder prediction 1 27 - -
Mch3g0205 327 Pfam Myb-like DNA-binding domain 151 200 IPR001005 -
Mch3g0205 327 MobiDBLite consensus disorder prediction 207 249 - -
Mch3g0205 327 Gene3D - 145 207 - -
Mch3g0205 327 SUPERFAMILY Homeodomain-like 145 205 IPR009057 -
Mch3g0205 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 204 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0880 Mch-Chr2:5993504 Mch3g0205 Mch-Chr3:2662966 6.69E-79 dispersed
Mch3g0205 Mch-Chr3:2662966 Mch5g1325 Mch-Chr5:14125354 5.63E-42 dispersed
Mch3g0205 Mch-Chr3:2662966 Mch7g1214 Mch-Chr7:15730654 4.20E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42985 PF00249 Myb_DNA-binding 1.30E-08 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0205 - - - 0.0