Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g0294 | ATGGACGAAGATAACGGCGCTCTCATTCAGAGCTTGATCGATGTAGTGAACGAGATTTCTTGGATCTCGGATTTTAGGCATACTGTTAAGAAGCAGTATTGCAATTTGTCCCGGAGGCTCAAGCTTCTGATCCCAATGTTCGAAGAGATTAGGGACAGCAAACAGCCAGTCCCCGAGCAAACTCTCAAAGCCCTCGTGTTGTTGAAACAAGCTCTCGAATCAGCTAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTTCCTCGTCGTAGAGAGGGAGCAGATTATGAACAAATTTCACGAGGTAACAGATCGGTTGGAACAAGCTTTGGAAGGAATAGCCTGCGATAAACTTGATATATCTGATGAAGTTAAGGAGCAGGTGGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGTCAGGGCAGATGTACCTGACTCCGAGATGGTGGATGATATCTTTGCCCTTTACAACACGAGTGATGATTCTTCCGTAGATAAAGACCGCCTGAGGAGACTGGCTGAAAAGTTACAGTTAATTGGAATATCCGATCTTACACAAGAGTCAATAGCTTTGAATGAGATGGTTTCTGCTAGTGGAGGAGATCCAGAGCAGAGCATTGAGAAGATGGCAGGGCTGCTGAATAAAATAAAAGATTTTGTGCAAAAAGAGAACCTCGAGACGGACACTCCTGCTCGGGAAAATAGTGCTCCAGAAAGTTGCAGTGGACAAGTATCGAATGAGAAGAATCATAAGGCCCCAATTCTACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTTTCAACTGGACAGACCTATGAACGCTCCTGCATTGAGAAGTGGCTTGAAGCGGGGCACGGGACATGTCCGAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGTCTTATAGCCCAGTGGTGCGAGGCTAATGGTATTGAACCACCGAAACAACCCAGTAGTGCTCGACCATGTAGAAGCTCATCATCTTGCTCACCCGCTGAACGCACAAAGATTGATATTCTGCTTTGCAAACTTGCATCTGGAAATCCTGAAGACCAGCGATCAGCAGCTGGTGAGATCCGACTTCTTGCAAAGCGGAATGCAGATAATCGCGTTGCCATTGCTGAGGCTGGTGCAATACCTTTCCTTGTCGGACTTCTCTCAACTCCAGACTCCCGCGTTCAAGAGCATGCTGTGACAGCTCTTCTTAACCTTTCCATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCTGTTCCTGGTATCGTTCTCGTGCTCAAGAAGGGGAGCATGGAAGCACGGGAGAATGCTGCAGCCACTCTCTTCAGCCTTTCGGTTGTGGACGAAAATAAAGTTAGAATTGGCGGCTCAGGAGCTATCCCGCCACTGGTTACGCTGCTTAGCGAAGGCACCCAAAGGGGTAAGAAAGATGCTGCAACTGCTCTTTTCAACCTGTGCATCTACCAAGGAAATAAGGGAAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTTCTGACCGAACCTGGGACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCGATACTGGCTAGCCATCCCAAAGGGAAGGCTGCCATCGGATCAGCAAAGGCAGTGCCGGTTTTGGTAGAGGTTATTGGGACAGGATCCCCCAGAAACAGAGAGAATGCAGCAGCAGTTCTGGTGCACCTCTGCTCTGGAGACCAACAACACCTTGTGGAAGCCAAAGAACTCGGAGTGATCGGTCCATTGTTAGATTTGGCACAAAATGGCACAGATAGAGGTAAGCGAAAAGCTGCACAGTTGCTCGAGCGAGTGAACCGGTTCCTCGAGCAGAAAGAGCAGGCAGCTCAACCTCAAAACCAGCCATCAGAATCAACCTCTGCAACCGAAGTCGTCAGTGGCTGA | 1977 | 48.36 | MDEDNGALIQSLIDVVNEISWISDFRHTVKKQYCNLSRRLKLLIPMFEEIRDSKQPVPEQTLKALVLLKQALESAKKLLRFGSEGSKIFLVVEREQIMNKFHEVTDRLEQALEGIACDKLDISDEVKEQVELVLAQFRRAKVRADVPDSEMVDDIFALYNTSDDSSVDKDRLRRLAEKLQLIGISDLTQESIALNEMVSASGGDPEQSIEKMAGLLNKIKDFVQKENLETDTPARENSAPESCSGQVSNEKNHKAPILPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKQPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPFLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGGSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPKGKAAIGSAKAVPVLVEVIGTGSPRNRENAAAVLVHLCSGDQQHLVEAKELGVIGPLLDLAQNGTDRGKRKAAQLLERVNRFLEQKEQAAQPQNQPSESTSATEVVSG | 658 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4172226 | 4176804 | - | MC03g0207 | Mch3g0294 | 683197 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g0294 | 658 | FunFam | RING-type E3 ubiquitin transferase | 5 | 118 | - | - | |
Mch3g0294 | 658 | ProSiteProfiles | U-box domain profile. | 257 | 331 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch3g0294 | 658 | Gene3D | - | 7 | 117 | IPR036537 | GO:0007166(InterPro) | |
Mch3g0294 | 658 | SMART | arm_5 | 385 | 425 | IPR000225 | GO:0005515(InterPro) | |
Mch3g0294 | 658 | SMART | arm_5 | 508 | 548 | IPR000225 | GO:0005515(InterPro) | |
Mch3g0294 | 658 | SMART | arm_5 | 426 | 466 | IPR000225 | GO:0005515(InterPro) | |
Mch3g0294 | 658 | SMART | arm_5 | 467 | 507 | IPR000225 | GO:0005515(InterPro) | |
Mch3g0294 | 658 | SMART | arm_5 | 591 | 631 | IPR000225 | GO:0005515(InterPro) | |
Mch3g0294 | 658 | SMART | arm_5 | 549 | 589 | IPR000225 | GO:0005515(InterPro) | |
Mch3g0294 | 658 | MobiDBLite | consensus disorder prediction | 230 | 254 | - | - | |
Mch3g0294 | 658 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 519 | 561 | IPR000225 | GO:0005515(InterPro) | |
Mch3g0294 | 658 | MobiDBLite | consensus disorder prediction | 636 | 658 | - | - | |
Mch3g0294 | 658 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 396 | 438 | IPR000225 | GO:0005515(InterPro) | |
Mch3g0294 | 658 | MobiDBLite | consensus disorder prediction | 233 | 251 | - | - | |
Mch3g0294 | 658 | FunFam | RING-type E3 ubiquitin transferase | 341 | 492 | - | - | |
Mch3g0294 | 658 | Pfam | Mixed lineage kinase domain-like N-terminal domain | 28 | 116 | IPR054000 | - | |
Mch3g0294 | 658 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 331 | IPR013083 | - | |
Mch3g0294 | 658 | SUPERFAMILY | RING/U-box | 258 | 333 | - | - | |
Mch3g0294 | 658 | FunFam | RING-type E3 ubiquitin transferase | 258 | 331 | - | - | |
Mch3g0294 | 658 | CDD | MLKL_NTD | 10 | 138 | - | - | |
Mch3g0294 | 658 | FunFam | RING-type E3 ubiquitin transferase | 532 | 650 | - | - | |
Mch3g0294 | 658 | SMART | Ubox_2 | 261 | 324 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch3g0294 | 658 | Pfam | Armadillo/beta-catenin-like repeat | 468 | 506 | IPR000225 | GO:0005515(InterPro) | |
Mch3g0294 | 658 | Pfam | Armadillo/beta-catenin-like repeat | 385 | 424 | IPR000225 | GO:0005515(InterPro) | |
Mch3g0294 | 658 | Pfam | Armadillo/beta-catenin-like repeat | 550 | 589 | IPR000225 | GO:0005515(InterPro) | |
Mch3g0294 | 658 | Pfam | U-box domain | 259 | 328 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch3g0294 | 658 | CDD | RING-Ubox_PUB | 259 | 311 | IPR045210 | - | |
Mch3g0294 | 658 | PANTHER | U BOX DOMAIN-CONTAINING | 28 | 631 | - | - | |
Mch3g0294 | 658 | Gene3D | - | 342 | 656 | IPR011989 | - | |
Mch3g0294 | 658 | SUPERFAMILY | ARM repeat | 356 | 629 | IPR016024 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0424 | Mch-Chr2:3103831 | Mch3g0294 | Mch-Chr3:4172226 | 1.77E-90 | dispersed | |
Mch2g0908 | Mch-Chr2:6172638 | Mch3g0294 | Mch-Chr3:4172226 | 2.09E-192 | dispersed | |
Mch3g0294 | Mch-Chr3:4172226 | Mch9g1301 | Mch-Chr9:15216303 | 1.12E-62 | dispersed | |
Mch3g0294 | Mch-Chr3:4172226 | Mch3g1460 | Mch-Chr3:16894727 | 1.36E-48 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g0294 | K27628 | - | csv:101218572 | 1079.32 |