Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0294 ATGGACGAAGATAACGGCGCTCTCATTCAGAGCTTGATCGATGTAGTGAACGAGATTTCTTGGATCTCGGATTTTAGGCATACTGTTAAGAAGCAGTATTGCAATTTGTCCCGGAGGCTCAAGCTTCTGATCCCAATGTTCGAAGAGATTAGGGACAGCAAACAGCCAGTCCCCGAGCAAACTCTCAAAGCCCTCGTGTTGTTGAAACAAGCTCTCGAATCAGCTAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTTCCTCGTCGTAGAGAGGGAGCAGATTATGAACAAATTTCACGAGGTAACAGATCGGTTGGAACAAGCTTTGGAAGGAATAGCCTGCGATAAACTTGATATATCTGATGAAGTTAAGGAGCAGGTGGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGTCAGGGCAGATGTACCTGACTCCGAGATGGTGGATGATATCTTTGCCCTTTACAACACGAGTGATGATTCTTCCGTAGATAAAGACCGCCTGAGGAGACTGGCTGAAAAGTTACAGTTAATTGGAATATCCGATCTTACACAAGAGTCAATAGCTTTGAATGAGATGGTTTCTGCTAGTGGAGGAGATCCAGAGCAGAGCATTGAGAAGATGGCAGGGCTGCTGAATAAAATAAAAGATTTTGTGCAAAAAGAGAACCTCGAGACGGACACTCCTGCTCGGGAAAATAGTGCTCCAGAAAGTTGCAGTGGACAAGTATCGAATGAGAAGAATCATAAGGCCCCAATTCTACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTTTCAACTGGACAGACCTATGAACGCTCCTGCATTGAGAAGTGGCTTGAAGCGGGGCACGGGACATGTCCGAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGTCTTATAGCCCAGTGGTGCGAGGCTAATGGTATTGAACCACCGAAACAACCCAGTAGTGCTCGACCATGTAGAAGCTCATCATCTTGCTCACCCGCTGAACGCACAAAGATTGATATTCTGCTTTGCAAACTTGCATCTGGAAATCCTGAAGACCAGCGATCAGCAGCTGGTGAGATCCGACTTCTTGCAAAGCGGAATGCAGATAATCGCGTTGCCATTGCTGAGGCTGGTGCAATACCTTTCCTTGTCGGACTTCTCTCAACTCCAGACTCCCGCGTTCAAGAGCATGCTGTGACAGCTCTTCTTAACCTTTCCATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCTGTTCCTGGTATCGTTCTCGTGCTCAAGAAGGGGAGCATGGAAGCACGGGAGAATGCTGCAGCCACTCTCTTCAGCCTTTCGGTTGTGGACGAAAATAAAGTTAGAATTGGCGGCTCAGGAGCTATCCCGCCACTGGTTACGCTGCTTAGCGAAGGCACCCAAAGGGGTAAGAAAGATGCTGCAACTGCTCTTTTCAACCTGTGCATCTACCAAGGAAATAAGGGAAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTTCTGACCGAACCTGGGACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCGATACTGGCTAGCCATCCCAAAGGGAAGGCTGCCATCGGATCAGCAAAGGCAGTGCCGGTTTTGGTAGAGGTTATTGGGACAGGATCCCCCAGAAACAGAGAGAATGCAGCAGCAGTTCTGGTGCACCTCTGCTCTGGAGACCAACAACACCTTGTGGAAGCCAAAGAACTCGGAGTGATCGGTCCATTGTTAGATTTGGCACAAAATGGCACAGATAGAGGTAAGCGAAAAGCTGCACAGTTGCTCGAGCGAGTGAACCGGTTCCTCGAGCAGAAAGAGCAGGCAGCTCAACCTCAAAACCAGCCATCAGAATCAACCTCTGCAACCGAAGTCGTCAGTGGCTGA 1977 48.36 MDEDNGALIQSLIDVVNEISWISDFRHTVKKQYCNLSRRLKLLIPMFEEIRDSKQPVPEQTLKALVLLKQALESAKKLLRFGSEGSKIFLVVEREQIMNKFHEVTDRLEQALEGIACDKLDISDEVKEQVELVLAQFRRAKVRADVPDSEMVDDIFALYNTSDDSSVDKDRLRRLAEKLQLIGISDLTQESIALNEMVSASGGDPEQSIEKMAGLLNKIKDFVQKENLETDTPARENSAPESCSGQVSNEKNHKAPILPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKQPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPFLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGGSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPKGKAAIGSAKAVPVLVEVIGTGSPRNRENAAAVLVHLCSGDQQHLVEAKELGVIGPLLDLAQNGTDRGKRKAAQLLERVNRFLEQKEQAAQPQNQPSESTSATEVVSG 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4172226 4176804 - MC03g0207 Mch3g0294 683197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0294 658 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Mch3g0294 658 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g0294 658 Gene3D - 7 117 IPR036537 GO:0007166(InterPro)
Mch3g0294 658 SMART arm_5 385 425 IPR000225 GO:0005515(InterPro)
Mch3g0294 658 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
Mch3g0294 658 SMART arm_5 426 466 IPR000225 GO:0005515(InterPro)
Mch3g0294 658 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
Mch3g0294 658 SMART arm_5 591 631 IPR000225 GO:0005515(InterPro)
Mch3g0294 658 SMART arm_5 549 589 IPR000225 GO:0005515(InterPro)
Mch3g0294 658 MobiDBLite consensus disorder prediction 230 254 - -
Mch3g0294 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515(InterPro)
Mch3g0294 658 MobiDBLite consensus disorder prediction 636 658 - -
Mch3g0294 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515(InterPro)
Mch3g0294 658 MobiDBLite consensus disorder prediction 233 251 - -
Mch3g0294 658 FunFam RING-type E3 ubiquitin transferase 341 492 - -
Mch3g0294 658 Pfam Mixed lineage kinase domain-like N-terminal domain 28 116 IPR054000 -
Mch3g0294 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 331 IPR013083 -
Mch3g0294 658 SUPERFAMILY RING/U-box 258 333 - -
Mch3g0294 658 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Mch3g0294 658 CDD MLKL_NTD 10 138 - -
Mch3g0294 658 FunFam RING-type E3 ubiquitin transferase 532 650 - -
Mch3g0294 658 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g0294 658 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515(InterPro)
Mch3g0294 658 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515(InterPro)
Mch3g0294 658 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515(InterPro)
Mch3g0294 658 Pfam U-box domain 259 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch3g0294 658 CDD RING-Ubox_PUB 259 311 IPR045210 -
Mch3g0294 658 PANTHER U BOX DOMAIN-CONTAINING 28 631 - -
Mch3g0294 658 Gene3D - 342 656 IPR011989 -
Mch3g0294 658 SUPERFAMILY ARM repeat 356 629 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0424 Mch-Chr2:3103831 Mch3g0294 Mch-Chr3:4172226 1.77E-90 dispersed
Mch2g0908 Mch-Chr2:6172638 Mch3g0294 Mch-Chr3:4172226 2.09E-192 dispersed
Mch3g0294 Mch-Chr3:4172226 Mch9g1301 Mch-Chr9:15216303 1.12E-62 dispersed
Mch3g0294 Mch-Chr3:4172226 Mch3g1460 Mch-Chr3:16894727 1.36E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0294 K27628 - csv:101218572 1079.32