Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch3g0484 | GATCCAGATGCAGAAGTAATAGCGATGTCTCCAAAGTCTCTGATGACGAAGAATCGGTTCATCTGCGAGATATGCAACAAGGGATTTCAGAGGGATCAGAACCTGCAGCTACACCGCCGCGGGCACAACCTACCGTGGAAACTCCGACAGAGGACAAGCAAGGAGGTGAGGAAGAAGGTGTATGTGTGCCCGGAGAAGAACTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTCACCGGGGTGAAGAAGCACTACAGCCGGAAGCACGGGGAGAAGAAGTGGAAGTGCGAGAAGTGCTCGAAGAAGTATGCAGTTCAATCGGACTGGAAGGCTCATTCCAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATTACACACAGAGCATTTTGTGATGCATTAGCAGAAGAAAACTCAAGAATCACCTCAGTTTCAGTTCCAACTATGAATAATCATCATCATCATAATCCATCTTTCATAAACAACACCACTCTTCAAAACAATAATCCCCACCACCATTTTTCTTCTTCCTCCTCTTCATCACTGCTTAATTTCCAGCCAAATTTCGCTGTCGCCGCTGCGGCCGTGAACAGTTTCTCCATCATTCCCGACCATGGCAGCGACTCGAAGCCGCCGCCGCAGGTCCCCCTCTGGCTCGACTCTCCAACGAACCCGAACTCGAACCCTTTTTTCTCCGACCACTCACCCTTCATGCCGGAAAATCACCCTTTCTTGTCGGAGCCGTTACCGACAGCCTCGTCGTACTCGGTAGCGGCCGTGGTGACGCCTCACATGTCGGCCACGGCGCTCCTGCAGCAAGCCGCCCAAATGGGGCCCACCGCTGCCGCCGCGTCGGCGATATATGGGATGAACTCCGCCGGTCTATTGAACCACAAGAATATTTTCCTGCCGCCGCAAGACGGAGCTGACGGCGTCCACCGGCTAATGGGCGGCGACGGTGTGTTGAAGGAGGAAATTAATGGGCAGAGTTTGACCAGAGACTTTCTTGGAGTTGGAAATCAGCTGGTGCACCTCCCGCCGGTGGGCTCCAATGGCGTGGAGATTAGCCATTACAGCGAGACCCGCCGCCATTAG | 1134 | 53.79 | DPDAEVIAMSPKSLMTKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKNCVHHDPARALGDLTGVKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRITSVSVPTMNNHHHHNPSFINNTTLQNNNPHHHFSSSSSSSLLNFQPNFAVAAAAVNSFSIIPDHGSDSKPPPQVPLWLDSPTNPNSNPFFSDHSPFMPENHPFLSEPLPTASSYSVAAVVTPHMSATALLQQAAQMGPTAAAASAIYGMNSAGLLNHKNIFLPPQDGADGVHRLMGGDGVLKEEINGQSLTRDFLGVGNQLVHLPPVGSNGVEISHYSETRRH | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8720085 | 8722380 | - | MC03g0291 | Mch3g0484 | 683387 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch3g0484 | 377 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 354 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Mch3g0484 | 377 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 74 | 153 | - | - | |
Mch3g0484 | 377 | Gene3D | Classic Zinc Finger | 3 | 72 | - | - | |
Mch3g0484 | 377 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 95 | 119 | - | - | |
Mch3g0484 | 377 | FunFam | protein indeterminate-domain 12-like | 1 | 67 | - | - | |
Mch3g0484 | 377 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 122 | 161 | - | - | |
Mch3g0484 | 377 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 57 | 91 | - | - | |
Mch3g0484 | 377 | SMART | c2h2final6 | 20 | 42 | IPR013087 | - | |
Mch3g0484 | 377 | SMART | c2h2final6 | 61 | 91 | IPR013087 | - | |
Mch3g0484 | 377 | SMART | c2h2final6 | 96 | 116 | IPR013087 | - | |
Mch3g0484 | 377 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 22 | 42 | IPR013087 | - | |
Mch3g0484 | 377 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 20 | 42 | IPR013087 | - | |
Mch3g0484 | 377 | Gene3D | Classic Zinc Finger | 74 | 153 | - | - | |
Mch3g0484 | 377 | SUPERFAMILY | beta-beta-alpha zinc fingers | 19 | 116 | IPR036236 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g0484 | Mch-Chr3:8720085 | Mch8g1263 | Mch-Chr8:9149053 | 4.93E-99 | dispersed | |
Mch3g0484 | Mch-Chr3:8720085 | Mch5g1758 | Mch-Chr5:18158748 | 1.20E-101 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42992 | PF12171 | zf-C2H2_jaz | 5.20E-05 | CL0361 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch3g0484 | K25870 | - | csv:101212420 | 445.277 |