Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0484 GATCCAGATGCAGAAGTAATAGCGATGTCTCCAAAGTCTCTGATGACGAAGAATCGGTTCATCTGCGAGATATGCAACAAGGGATTTCAGAGGGATCAGAACCTGCAGCTACACCGCCGCGGGCACAACCTACCGTGGAAACTCCGACAGAGGACAAGCAAGGAGGTGAGGAAGAAGGTGTATGTGTGCCCGGAGAAGAACTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTCACCGGGGTGAAGAAGCACTACAGCCGGAAGCACGGGGAGAAGAAGTGGAAGTGCGAGAAGTGCTCGAAGAAGTATGCAGTTCAATCGGACTGGAAGGCTCATTCCAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATTACACACAGAGCATTTTGTGATGCATTAGCAGAAGAAAACTCAAGAATCACCTCAGTTTCAGTTCCAACTATGAATAATCATCATCATCATAATCCATCTTTCATAAACAACACCACTCTTCAAAACAATAATCCCCACCACCATTTTTCTTCTTCCTCCTCTTCATCACTGCTTAATTTCCAGCCAAATTTCGCTGTCGCCGCTGCGGCCGTGAACAGTTTCTCCATCATTCCCGACCATGGCAGCGACTCGAAGCCGCCGCCGCAGGTCCCCCTCTGGCTCGACTCTCCAACGAACCCGAACTCGAACCCTTTTTTCTCCGACCACTCACCCTTCATGCCGGAAAATCACCCTTTCTTGTCGGAGCCGTTACCGACAGCCTCGTCGTACTCGGTAGCGGCCGTGGTGACGCCTCACATGTCGGCCACGGCGCTCCTGCAGCAAGCCGCCCAAATGGGGCCCACCGCTGCCGCCGCGTCGGCGATATATGGGATGAACTCCGCCGGTCTATTGAACCACAAGAATATTTTCCTGCCGCCGCAAGACGGAGCTGACGGCGTCCACCGGCTAATGGGCGGCGACGGTGTGTTGAAGGAGGAAATTAATGGGCAGAGTTTGACCAGAGACTTTCTTGGAGTTGGAAATCAGCTGGTGCACCTCCCGCCGGTGGGCTCCAATGGCGTGGAGATTAGCCATTACAGCGAGACCCGCCGCCATTAG 1134 53.79 DPDAEVIAMSPKSLMTKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKNCVHHDPARALGDLTGVKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRITSVSVPTMNNHHHHNPSFINNTTLQNNNPHHHFSSSSSSSLLNFQPNFAVAAAAVNSFSIIPDHGSDSKPPPQVPLWLDSPTNPNSNPFFSDHSPFMPENHPFLSEPLPTASSYSVAAVVTPHMSATALLQQAAQMGPTAAAASAIYGMNSAGLLNHKNIFLPPQDGADGVHRLMGGDGVLKEEINGQSLTRDFLGVGNQLVHLPPVGSNGVEISHYSETRRH 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8720085 8722380 - MC03g0291 Mch3g0484 683387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0484 377 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 354 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch3g0484 377 FunFam protein indeterminate-domain 5, chloroplastic-like 74 153 - -
Mch3g0484 377 Gene3D Classic Zinc Finger 3 72 - -
Mch3g0484 377 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 95 119 - -
Mch3g0484 377 FunFam protein indeterminate-domain 12-like 1 67 - -
Mch3g0484 377 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 122 161 - -
Mch3g0484 377 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 57 91 - -
Mch3g0484 377 SMART c2h2final6 20 42 IPR013087 -
Mch3g0484 377 SMART c2h2final6 61 91 IPR013087 -
Mch3g0484 377 SMART c2h2final6 96 116 IPR013087 -
Mch3g0484 377 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Mch3g0484 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 42 IPR013087 -
Mch3g0484 377 Gene3D Classic Zinc Finger 74 153 - -
Mch3g0484 377 SUPERFAMILY beta-beta-alpha zinc fingers 19 116 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0484 Mch-Chr3:8720085 Mch8g1263 Mch-Chr8:9149053 4.93E-99 dispersed
Mch3g0484 Mch-Chr3:8720085 Mch5g1758 Mch-Chr5:18158748 1.20E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42992 PF12171 zf-C2H2_jaz 5.20E-05 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0484 K25870 - csv:101212420 445.277