Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0514 TTCGCTCTGGTTTTTCCTAACCCCACCTTTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTGAGTCTAAAATGGAGTGCAGTGAGGCAAAATCGAACACAACTTCAACAATCCTCCGTTCTCAGTCGCCGTCACCGTCGCCGCCGCCGCCGCCAAGTATTCCGGCGGGCGTTGTGGTCAGTCCCTGCGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCCTATTTCCCTCCCTCTGATCCTTTCAAGTTCACCATTGCTCATCGCGTCTTCGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCCGAATCACAGAGGGCCGATGCAGTGAGCAGTTTGGTGTACGAAGCAAGTGCAAGAATCAGAGATCCAGTATATGGGTGTGCAGGAGCCATTTGCCAGCTCCAAAAACAGATAAACGAACTCCAAGCAGAGTTAGCCAAAACACAGGCAGAGCTTGTCAATATGCATTGCCACCAAGCCAGTTTGGTGGCTCTGATTTGCAAGGAATTAGCTCAAACCCCGCCACCGGTGCCGCCGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACTCCTCAGAGCTACCAAAACTACACACCTTTCTTGGAGGATAGCAACATTTGGGAGCCTCTTTGGACATGA 705 51.77 FALVFPNPTFLSPLSLSLSLSLSLSLSLSTESKMECSEAKSNTTSTILRSQSPSPSPPPPPSIPAGVVVSPCAACKILRRRCAEKCVLAPYFPPSDPFKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNMHCHQASLVALICKELAQTPPPVPPPDHRSLDNNFNIATPQSYQNYTPFLEDSNIWEPLWT 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9169524 9171297 - MC03g0309 Mch3g0514 683417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0514 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 69 194 - -
Mch3g0514 234 Coils Coil 150 177 - -
Mch3g0514 234 Pfam Lateral organ boundaries (LOB) domain 71 168 IPR004883 -
Mch3g0514 234 MobiDBLite consensus disorder prediction 37 51 - -
Mch3g0514 234 ProSiteProfiles LOB domain profile. 70 171 IPR004883 -
Mch3g0514 234 MobiDBLite consensus disorder prediction 37 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0380 Mch-Chr2:2802266 Mch3g0514 Mch-Chr3:9169524 4.78E-66 dispersed
Mch3g0514 Mch-Chr3:9169524 Mch9g1638 Mch-Chr9:18513217 2.01E-60 dispersed
Mch3g0514 Mch-Chr3:9169524 Mch9g1433 Mch-Chr9:16724604 5.17E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42994 PF03195 LOB 5.70E-41 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0514 - - - 0.0