Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch3g0519 | GTCATACTTGAGGTACCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTTAAGATTCAATTAATGGAAGCAGTAGAATGGCCTCAAAAACATCAAGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGCAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAAGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCTGTTAAATCTCTATTTGCTAAGGCAAGAGCTAATGCACCATCAATAATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGAGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTTACTGTCATTGCTGCTACCAATCGGCCAGATAAGATTGATCCAGCCCTTCTTAGGCCAGGACGTTTTGATCGGCTGCTATATGTTGGGCCCCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAGAGTTCCGTGCAGCCGAGATGTCAGTACAAGGAAGTTAGCTTCTCTTACTCAAGGCTGTTCAGGGGCTGACATATCATTAATTTGTAGAGAAGCAGCTTTATTAGCCCTTGAGGAGAACCTTGAGGCTTCAAAAATAAATATGTTGCATTTAGAAACTGCTGTTAGACACGTGAAGCCATCTGAAACTGAACCTTATCAAGAGTTATCATCCAAGTTTCAAAGACTTGTTTGTTCTACATCACAAGGAACTGATGTAGTGTATCAGCAGTGCGCAAGACAATCTAACTGGCTTTCTAAATGGTCCCTTGTAAAATCTACTTTGTCGCTCTTCTCTCGGTTTCCAGCTCGTGTTCATCACATGCTCGAAGGCTTCAAATGA | 966 | 42.03 | VILEVPKVKWEDIGGQREVKIQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVKSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCRVPCSRDVSTRKLASLTQGCSGADISLICREAALLALEENLEASKINMLHLETAVRHVKPSETEPYQELSSKFQRLVCSTSQGTDVVYQQCARQSNWLSKWSLVKSTLSLFSRFPARVHHMLEGFK | 321 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 9222231 | 9235061 | - | MC03g0313 | Mch3g0519 | 683422 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch3g0519 | 321 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 6 | 260 | IPR027417 | - | |
| Mch3g0519 | 321 | FunFam | spermatogenesis-associated protein 5-like protein 1 | 181 | 266 | - | - | |
| Mch3g0519 | 321 | Coils | Coil | 229 | 249 | - | - | |
| Mch3g0519 | 321 | SMART | AAA_5 | 44 | 182 | IPR003593 | GO:0016887(InterPro) | |
| Mch3g0519 | 321 | CDD | RecA-like_CDC48_r2-like | 19 | 178 | - | - | |
| Mch3g0519 | 321 | Gene3D | - | 5 | 180 | IPR027417 | - | |
| Mch3g0519 | 321 | Pfam | ATPase family associated with various cellular activities (AAA) | 48 | 179 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch3g0519 | 321 | Pfam | AAA+ lid domain | 202 | 247 | IPR041569 | - | |
| Mch3g0519 | 321 | PANTHER | AAA-FAMILY ATPASE | 3 | 268 | IPR050168 | GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER) | |
| Mch3g0519 | 321 | ProSitePatterns | AAA-protein family signature. | 150 | 168 | IPR003960 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Mch3g0519 | 321 | Gene3D | - | 181 | 246 | - | - | |
| Mch3g0519 | 321 | FunFam | calmodulin-interacting protein 111 isoform X1 | 5 | 180 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch3g0519 | Mch-Chr3:9222231 | Mch3g0523 | Mch-Chr3:9280356 | 9.48E-205 | dispersed | |
| Mch3g0519 | Mch-Chr3:9222231 | Mch3g0521 | Mch-Chr3:9238066 | 8.17E-110 | proximal |
Pathway information