Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0521 GATGGAGTGCAATTATCAACAAATCTCTCATACACCTTGGGTTGTCCTAGATCAGGCCGTGTTGTGTTTATATTTCCTTTAAAAAACCACCCATGCAATGGTAAGTTAAATGAAATTGGGAAATTAAAGAGCACAGACGTTGAATCTCTGAGAATATATAATTGTAAGGAACTGTTCTTGGAGCTGGCTTCTTCTTCCAATATATCCACAAAAGACAACAACTTATTCTCTTCCTCCTCTATTTATTTAAGAAAGGTTCATGATCGTGGTGAAAATGGTAATTTATCATCACCAAGTACTGGGATGTCTGCATCTCCAAATTGTGATGACATGGTATCAAATTTACCTATGGAGAGTCCTTGTGATCACTCACTTATTAAGGAGGCCTTAGGAAATGATAATGTTAAAAAAACTCTGCAGACAATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTCCGTGGAAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTCCATGTGAGGGGTGGTAAAGGACCATCAGCATATGATGACTCTTATAATTGTGCAATGGAAAGTATCAATCATTCTCAACCTTCTATGTCAAATGAATATGTGGATTATGCTTTCAAAATAGACCAGCTGACAAAAGTATTTATAAATGTTAAATCAACTACAGTCTCGGAGACAGTGCAAGATAGAGTTTTATCGAATGTGGAATCTCAAAATCTAAATATTACAGCTAAAGCAAAGCGTAAAGTTTCAAAATTGGGCGGTCTTTCTAAAGAATATTCAGTTTTAAAGGATATTATAATTGCCTCATCATTAAATGGCACTGTGTCAAGCCTTGGTTTACGAACTATGAAGGGAGTACTTCTCCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAGTTATGTGCTCATGATGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGAAGTTTTCGAGTCGGCAAGCCAAGCTACACCTGCTGTGATATTAATTGATGAGTTGGATGCTATTGCGCCGGCAAGAAAAGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATTGCTTAATCTGATGGATGGGATCAATCGAAGTGGTGGGCCACTTGTAATTGCTTCTACGAATAGGCCTGATAGCATTGAGCCTGCGCTAAGGCGGCCTGGGAGACTTGATCGAGAAATTGAAATTGGTGTGCCATCTCCCAATCAACGGTTGGATATTCTACAAATAATTCTAAGTGAAATGAAGCACTCTCTGTCAGACCTGCAAGTTCAACATCTAGCTACGGTTACACATGGTTTTGTGGGTGCTGATTTGGCTGCCCTTTGCAATGAGGCAGCCTTAGTTTGTATAAGGCGTTATCATAAGTTTACCAAGGTGGAGGATGAAGGCTATTTTGATGATGTGATTTTAGAACCTATTCTCTCTAAAGATGAAAAAAGTATCTCAGGGGTTTGCTCAAAATTTGCATCTTCATCCCTTTCTGACGAAGTGGTAGCCGATAATGCAGATATTTATAACTATTCTGGAATCAGGTGTAGGTTGAAGATTGTTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGAGGCCTAGTGCTATGCGAGAGGTCATACTTGAGGTACCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTTACGATTCAATTAATGGAAGCAGTAGAATGGCCTCAAAAACATCAAGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGCAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAAGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCTGTTAAATCTCTATTTGCTAAGGCAAGAGCTAATGCACCATCAATAATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGAGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTTACTGTCATTGCTGCTACCAATCGGCCAGATAAGATTGATCCAGCCCTTCTTAGGCCAGGT 2178 39.72 DGVQLSTNLSYTLGCPRSGRVVFIFPLKNHPCNGKLNEIGKLKSTDVESLRIYNCKELFLELASSSNISTKDNNLFSSSSIYLRKVHDRGENGNLSSPSTGMSASPNCDDMVSNLPMESPCDHSLIKEALGNDNVKKTLQTIASNELYKRCLLRGNLVTIPVLSDLCTFHVRGGKGPSAYDDSYNCAMESINHSQPSMSNEYVDYAFKIDQLTKVFINVKSTTVSETVQDRVLSNVESQNLNITAKAKRKVSKLGGLSKEYSVLKDIIIASSLNGTVSSLGLRTMKGVLLHGPPGTGKTSLAQLCAHDAGVNLFYLNGPEIISQYHGESEQALHEVFESASQATPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILQIILSEMKHSLSDLQVQHLATVTHGFVGADLAALCNEAALVCIRRYHKFTKVEDEGYFDDVILEPILSKDEKSISGVCSKFASSSLSDEVVADNADIYNYSGIRCRLKIVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQREVTIQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVKSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPG 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9238066 9272402 + MC03g0314 Mch3g0521 683424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0521 726 Gene3D - 230 417 IPR027417 -
Mch3g0521 726 FunFam Putative vesicular transport protein (CDC48) 237 417 - -
Mch3g0521 726 CDD RecA-like_CDC48_r2-like 578 726 - -
Mch3g0521 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 483 IPR027417 -
Mch3g0521 726 FunFam calmodulin-interacting protein 111 isoform X1 561 726 - -
Mch3g0521 726 PANTHER AAA-FAMILY ATPASE 389 726 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Mch3g0521 726 Pfam ATPase family associated with various cellular activities (AAA) 604 724 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch3g0521 726 Pfam ATPase family associated with various cellular activities (AAA) 288 417 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch3g0521 726 Gene3D - 561 724 IPR027417 -
Mch3g0521 726 ProSitePatterns AAA-protein family signature. 706 724 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch3g0521 726 SMART AAA_5 284 420 IPR003593 GO:0016887(InterPro)
Mch3g0521 726 SMART AAA_5 600 726 IPR003593 GO:0016887(InterPro)
Mch3g0521 726 Gene3D - 418 526 - -
Mch3g0521 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 725 IPR027417 -
Mch3g0521 726 Pfam AAA+ lid domain 441 477 IPR041569 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0521 Mch-Chr3:9238066 Mch5g1737 Mch-Chr5:18020168 5.06E-121 dispersed
Mch3g0519 Mch-Chr3:9222231 Mch3g0521 Mch-Chr3:9238066 8.17E-110 proximal
Mch3g0521 Mch-Chr3:9238066 Mch3g0523 Mch-Chr3:9280356 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0521 - - - 0.0