Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0523 ATGCCTTCAAAGGGAAAGAAGAACTCAAAGACGCTCTCTAGATTGTCTAACTCGAACAAATCTCAATCACCTCTGCCACGGTTGGCGATACCTCCTGCCTCTGAAGTTGGTGAAGATGATTTTGTTTCCTCCATTGAAGAAGCTTCAAGTAAATATCCTTCTTTGATCGGTAAATCTGCGTTCATTGGGAGAGTTACTAATGCTCCAATCCAATCTGGTGGTTGTAAAGTTTGGCTTTCTGAATCTTCTATGGTTGCTTCTAGCTTCACCCAAGGAGCTATCGTCTCGGTAGCACTTGCTTCTGTAGAAGGGAGCAATTTAGAAGGTTTTCCTCTTTCCTCATTTGCAGATGAATGTAGTAGACACTTTGGGATTGATTATGAAGATTCTTTAACCAATGAAGTGGGAAATTACTTTGCTCTTGCGAGAATTTTTTCTTCTAATAAGGAGTTAAATGATGGAGTGCAATTATCAACAAATCTCTCATACACCTTGGGTTGTCCTAGATCAGGCCGTGTTGTGTTTATATTTCCGTTAAAAAACCACCAATGCAATGGTAAGTTAAATGAAAATGGGAAATTAAAGAGCACAGACGTTGAATCTCTGAGAATATATAATTGTAAGGAACTGTTCTTGGAGCTGGCTTCTTCATCCAATAAATCCACAAAAGACAACTTATTCTCTTCCTCCTCTATTTATTTAAGAAAGGTTCATGATCGTGGTGAAAATGGTAATTTATCATCACCAAGTACTGGGATGTCTGCATCTCCAAATTGTGATGACATGGTGTCAAATTTACCTGTGGAGAGTCCTTGCGATCACTCACTTATTAAGGAAGCCTTAGGAGATGATAATGTTAAAAAAACTCTGCAGACGATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTCCGTGGAAATCTTGTAACTATCCCAGTGCTTTCAGATCTTTGTACATTCCATGTGAGGGGTGGTAAAGGACCATCAGCATATGATGACTCTTATAATTCCGTGTGCAATGGAAAGAATCATTCTCAACCTTCTATGTCAAATGAATATGTGGATTATGCTTTCAAAATTGACCAGCTGACAAAAGTATTTATAAATGTTCAATCAACTACAGTCTCGGAGACAGTGCAAGATAGAGTTTTATCGAATGTGGAATCTCAAAATCTAAATATTACAGCTAAAGCAAAGCGTAAAGTTTCAAAATTGGGCGGTCTTTCTAAAGAATATTCAGTTTTAAAGGATATTATAATTGCCTCATCATTAAATGGCACTGTGTCAAGCCTTGGTTTACGAACTATGAAGGGAGTACTTCTCCATGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAGTTATGTGCTCATGATGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGAAGTTTTCGAGTCGGCAAGCCAAGCTACACCTGCTGTGATATTAATTGATGAGTTGGATGCTATTGCGCCGGCAAGAAAAGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATTGCTTAATCTGATGGATGGGATCAATCGAAGTGGTGGGCCACTTGTAATTGCTTCTACGAATAGGCCTGATAGCATTGAGCCTGCGCTAAGGCGGCCTGGGAGACTTGATCGAGAAATTGAAATTGGTGTGCCATCTCCCAATCAACGGTTGGATATTCTACAAATAATTCTAAGTGAAATGAAGCACTCTCTGTCAGACCTGCAAGTTCAACATCTAGCTACGGTTACACATGGTTTTGTGGGTGCTGATTTGGCTGCCCTTTGCAATGAGGCAGCCTTAGTTTGTATAAGGCGTTATCATAAGTTTACCAAGGTGGAGGATGAAGGCTATTTTGATGATGTGATTTTAGAACCTATTCTCTCTAAAGATGAAAAAAGTATCTCAGGGGTTTGCTCAAAATTTGCATCTTCATCCCTTTCTGACGAAGTGGTAGCCGATAATGCAGATATTTATAACTATTCTGGAATCAGGTGTAGGTTGAAGATTGTTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGAGGCCTAGTGCTATGCGAGAGGTCATACTTGAGGTACCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTTACGATTCAATTAATGGAAGCAGTAGAATGGCCTCAAAAACATCAAGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGCAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAAGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCTGTTAAATCTCTATTTGCTAAGGCAAGAGCTAATGCACCATCAATAATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGAGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTTACTGTCATTGCTGCTACCAATCGGCCAGATAAGATTGATCCAGCCCTTCTTAGGCCAGGACGTTTTGATCGGCTGCTATATGTTGGGCCCCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAGAGTTCCGTGCAGCCGAGATGTCAGTACAAGGAAGTTAGCTTCTCTTACTCAAGGCTGTTCAGGGGCTGACATATCATTAATTTGTAGAGAAGCAGCTTTATTAGCCCTTGAGGAGAACCTTGAGGCTTCAAAAATAAATATGTTGCATTTAGAAACTGCTGTTAGACACGTGAAGCCATCTGAAACTGAACCTTATCAAGAGTTATCATCCAAGTTTCAAAGACTTGTTTGTTCTACATCACAAGGAACTGATGTAGTGTATCAGCAGTGCGCAAGACAATCTAACTGGCTTTCTAAATGG 3009 40.21 MPSKGKKNSKTLSRLSNSNKSQSPLPRLAIPPASEVGEDDFVSSIEEASSKYPSLIGKSAFIGRVTNAPIQSGGCKVWLSESSMVASSFTQGAIVSVALASVEGSNLEGFPLSSFADECSRHFGIDYEDSLTNEVGNYFALARIFSSNKELNDGVQLSTNLSYTLGCPRSGRVVFIFPLKNHQCNGKLNENGKLKSTDVESLRIYNCKELFLELASSSNKSTKDNLFSSSSIYLRKVHDRGENGNLSSPSTGMSASPNCDDMVSNLPVESPCDHSLIKEALGDDNVKKTLQTIASNELYKRCLLRGNLVTIPVLSDLCTFHVRGGKGPSAYDDSYNSVCNGKNHSQPSMSNEYVDYAFKIDQLTKVFINVQSTTVSETVQDRVLSNVESQNLNITAKAKRKVSKLGGLSKEYSVLKDIIIASSLNGTVSSLGLRTMKGVLLHGPPGTGKTSLAQLCAHDAGVNLFYLNGPEIISQYHGESEQALHEVFESASQATPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILQIILSEMKHSLSDLQVQHLATVTHGFVGADLAALCNEAALVCIRRYHKFTKVEDEGYFDDVILEPILSKDEKSISGVCSKFASSSLSDEVVADNADIYNYSGIRCRLKIVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQREVTIQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVKSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCRVPCSRDVSTRKLASLTQGCSGADISLICREAALLALEENLEASKINMLHLETAVRHVKPSETEPYQELSSKFQRLVCSTSQGTDVVYQQCARQSNWLSKW 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9280356 9296286 + MC03g0315 Mch3g0523 683426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0523 1003 MobiDBLite consensus disorder prediction 1 33 - -
Mch3g0523 1003 Gene3D - 569 676 - -
Mch3g0523 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 634 IPR027417 -
Mch3g0523 1003 PANTHER AAA-FAMILY ATPASE 61 975 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Mch3g0523 1003 Gene3D - 712 887 IPR027417 -
Mch3g0523 1003 FunFam calmodulin-interacting protein 111 isoform X1 712 887 - -
Mch3g0523 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 966 IPR027417 -
Mch3g0523 1003 FunFam spermatogenesis-associated protein 5-like protein 1 888 972 - -
Mch3g0523 1003 Pfam AAA+ lid domain 592 628 IPR041569 -
Mch3g0523 1003 Pfam AAA+ lid domain 909 954 IPR041569 -
Mch3g0523 1003 Pfam ATPase family associated with various cellular activities (AAA) 439 568 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch3g0523 1003 Pfam ATPase family associated with various cellular activities (AAA) 755 886 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch3g0523 1003 Gene3D - 381 568 IPR027417 -
Mch3g0523 1003 Gene3D - 888 952 - -
Mch3g0523 1003 ProSitePatterns AAA-protein family signature. 857 875 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch3g0523 1003 SMART AAA_5 435 571 IPR003593 GO:0016887(InterPro)
Mch3g0523 1003 SMART AAA_5 751 889 IPR003593 GO:0016887(InterPro)
Mch3g0523 1003 FunFam Putative vesicular transport protein (CDC48) 388 568 - -
Mch3g0523 1003 CDD RecA-like_CDC48_r2-like 729 885 - -
Mch3g0523 1003 MobiDBLite consensus disorder prediction 1 25 - -
Mch3g0523 1003 Coils Coil 936 956 - -
Mch3g0523 1003 CDD RecA-like_CDC48_NLV2_r1-like 404 567 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0519 Mch-Chr3:9222231 Mch3g0523 Mch-Chr3:9280356 9.48E-205 dispersed
Mch3g0523 Mch-Chr3:9280356 Mch5g1737 Mch-Chr5:18020168 6.91E-139 dispersed
Mch3g0521 Mch-Chr3:9238066 Mch3g0523 Mch-Chr3:9280356 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0523 - - - 0.0