Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0542 ATGGCCGGCAACCGTGCAGAACAAAGTTTGTATTTCGTGAGACAAGTTGTAGAAGGACGATGGTTTTCGGTGTTCGCGTCGTTTCTGATCATGATCGGTGCGGGCTCGACGTACGTTTTCGGAACATACTCCAAAGTCATGAAGGCTCAATTCGATTACAGCCAAACCCAAGTTAACACCTTGGGATTCTTCAAAGATTTGGGCTCCAACCTTGGCGTTTTCGCCGGCCTCCTCGCCGAGGTGGCACCGCCATGGGTTCTCTTCGTCGTCGGCTCGTCGCTCAACTTCGTCAGCTACTTCATGATTTGGCTCTCCCTCACTCACCGGATCGCCAAGCCTGAGTTTTGGCACATGTGCACTTACATTTGCTTGGCTGCCAATTCCCAGAATTTCGCCAACACAGCGGTTTTGGTCACGAGCGTGAAGAATTTCCCCGAGCGAAGAGGGATTATTCTGGGGCTGCTCAAGGGCTTCGTTGGAGTTGGAGGGGCCATCTTAACACAGATGTATTTGGCCATTTATGGCCATGAAAATCAAGTCAATTTGGTGCTTCTTCTTTCGTGGTTTCCCACCATTATATCTCTTGTGTTTTTGCTCACAATTCGACCAATCAAAGTTCGGAAACATCCGGACGAGCTCAGGGTGATGTACCACTTGCTCTATGTGTCCATAATTCTGGCTTTGTTTCTCTTGTTCTTGACCATAACCCAAAAGCAAGCTGTTTTCTCTCAAGAGGGCTACATGAGTGGGGCTGCGGTTATTGCCTCCTTGCTATCTATCCCTCTTTTGATCGCTGTTAGGGAAGAATTCTTGCTGTTCAAGCTCAACAAGGAAACCACAAACCCGTCGGTCACGGTTTCGATTCTTGATCAGCAGAGACCTGCACCGATGTTGGACGAAATTGTAGAAGCTGAACCCTCATGTATGTCAAGTGTGTTTAACAAGCCCCAAAGAGGGGATGATTACACCATCTTGCAAGCTCTCTTCAGCAAAGACATGGCTCTTATTTTCGTCGGGGCGCTCTGCGGATGCGGCTCGTCCATTGCCGCCATTGACAATCTAGGCCAAATCGGAGAGTCACTTTACTATCCCGCTCAGTCCATAACCATCTTCATTTCCTTGATTTCCATATTCAATTTCTTCGGCCGGGTCTGCTCAGGCTTCATCTCCGAAACGCTTATGACCAAACACAAATTACCCCGTCCTCTCATGTTCGCCCTCGCCCATCTCCTCACCTGCATTGGCCTCCTCTTCGTCGCCTTTCCATTTCATGGTTCGATCTACATCGCTTCGGTCGTCGTTGGGTTCGGGTTTGGAGCCCAAGTTCCGATGGTATTCGCCATTATCTCTGAGCTCTTCGGTCTCAAACGCTACGCAACCCTCTTCAACTTTGGACAACTCTCGGTCCCGATCGGATCTTATATACTAAACGTGGATATAATAGGGAAGTTGTACGACATGGAAGCAAGAAAACAGGGTACTACGAAGAACGGCAAGGGTTTAACTTGCACGGGCCATGAGTGCTTCAGCACCTCTTTCACAATTTTGGCAACAGTAACATTGTTTGGGGCTTTGACTTCGCTTGTGCTGGCTTTTAGGACTCGAGACTTTTACAAAGGCGACGTATATAATAAATATAGAGAGGACATGTGGATGCCTGAATCGGATATGGAATTCTATTGCTTAGATAACAAGAAAAAAAGCAACGACAATCATCCCAATATTGTGGTGCACAAAAAATATGGTTTC 1749 47.63 MAGNRAEQSLYFVRQVVEGRWFSVFASFLIMIGAGSTYVFGTYSKVMKAQFDYSQTQVNTLGFFKDLGSNLGVFAGLLAEVAPPWVLFVVGSSLNFVSYFMIWLSLTHRIAKPEFWHMCTYICLAANSQNFANTAVLVTSVKNFPERRGIILGLLKGFVGVGGAILTQMYLAIYGHENQVNLVLLLSWFPTIISLVFLLTIRPIKVRKHPDELRVMYHLLYVSIILALFLLFLTITQKQAVFSQEGYMSGAAVIASLLSIPLLIAVREEFLLFKLNKETTNPSVTVSILDQQRPAPMLDEIVEAEPSCMSSVFNKPQRGDDYTILQALFSKDMALIFVGALCGCGSSIAAIDNLGQIGESLYYPAQSITIFISLISIFNFFGRVCSGFISETLMTKHKLPRPLMFALAHLLTCIGLLFVAFPFHGSIYIASVVVGFGFGAQVPMVFAIISELFGLKRYATLFNFGQLSVPIGSYILNVDIIGKLYDMEARKQGTTKNGKGLTCTGHECFSTSFTILATVTLFGALTSLVLAFRTRDFYKGDVYNKYREDMWMPESDMEFYCLDNKKKSNDNHPNIVVHKKYGF 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9570674 9572422 + MC03g0324 Mch3g0542 683445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0542 583 Gene3D MFS general substrate transporter like domains 17 214 IPR036259 -
Mch3g0542 583 Gene3D MFS general substrate transporter like domains 331 537 IPR036259 -
Mch3g0542 583 CDD MFS_Mch1p_like 19 524 - -
Mch3g0542 583 Pfam Nodulin-like 20 265 IPR010658 -
Mch3g0542 583 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 19 544 - GO:0016020(PANTHER)
Mch3g0542 583 SUPERFAMILY MFS general substrate transporter 21 536 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0542 Mch-Chr3:9570674 Mch3g0549 Mch-Chr3:9641114 2.51E-304 dispersed
Mch3g0539 Mch-Chr3:9535487 Mch3g0542 Mch-Chr3:9570674 8.27E-287 proximal
Mch3g0542 Mch-Chr3:9570674 Mch3g0543 Mch-Chr3:9581501 8.79E-308 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0542 - - - 0.0