Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0556 GGGAATGTTGAGGGATCCCCAGGGAGCTCGATGCATGGAGTGACCGGGAGAGAGCAGACATTCGCGTTCTCGGTGGCGTCCCCAATAGTCCCAACAGACACGAGCGCCAAATTCGCACTCCCGGTGGACTCGGAGCACAAGGCGAAGGTGTTCAAGATCTTCTCCTTAGCCAACCCCCACATGAGAACCTTCCACCTCTCATGGATCTCCTTCTTCACCTGCTTCGTCTCCACCTTCGCCGCCGCCCCTCTCGTCCCCATCATCCGCGACAACCTCAACCTCACCAAGTCCGACATCGGCAACGCCGGCGTCACCTCCGTCTCCGGCAGCATCTTCTCCCGTCTCGTCATGGGCGCCGTCTGCGACCTCCTCGGCCCCCGCTACGGCTGCGCCTTCCTCATCATGCTCTCCGCCCCCACCGTCTTCTGCATGTCCTTCGTCTCCTCCCCCGCCGGCTACATCGCCGTCCGCTTCATGATCGGCTTCTCCCTCGCCACCTTCGTCTCCTGCCAGTACTGGATGAGCACCATGTTCAACAGCCAGATCATCGGCCTCGTCAACGGCACCGCCGCCGGCTGGGGCAACATGGGCGGAGGCGCCACCCAGCTCCTCATGCCTCTCCTCTACGAGATCATCAAGAAGGTCGGGGCCACCCCCTTCACCGCCTGGAGGATCGCCTTCTTCATCCCCGGCTCCCTCCACGTCCTCATGGGCATTTTGGTCATGACTCTCGGCCAGGACTTGCCCGACGGAAATCTCAGCAGTCTCCAAAAGAAGGGCACCGTGGCCAAGGATAAATTTTCCAACGTGCTGTGGTACGCGGTCACCAACTACAGAACTTGGATCTTCGTTCTCCTGTATGGCTACTCAATGGGCGTCGAGCTCTCCACCGACAACGTCGTCGCCGAGTACTTCTACGACAGGTTCGACCTGAAGCTGCACACGGCGGGAATCATCGCAGCCACCTTCGGGATGGCGAATCTAGTGGCTCGCCCCTTCGGAGGGTACGCTTCCGACTTCGCAGCTCGATATTTCGGGATGAGGGGAAGGCTGTGGACCCTGTGGATCCTCCAAACGTGCGGTGGAGTGTTCTGCATGTGGCTTGGGAAGGCAACCCAGCTTCCAGTGGCCATAGTGGCCATGATCCTGTTCTCAATAGGAGCCCAGGCTGCGTGCGGAGCCACGTTTGGGATCATTCCCTTCATTTCCCGGCGCTCGTTGGGCATTATATCGGGCCTCACAGGCGCAGGAGGCAACTTCGGGTCTGGGTTGACTCAATTGGTGTTCTTCTCGACAACGAAATACTCCACAGACAAAGGGTTGTTCTTGATGGGCATTATGATCGTGTGCTGCACTCTTCCGGTCACATTGGTTCACTTCCCGCAGTGGGGGAGCATGTTCTTGCCGCCCACCAAACACGTGGAGAAATCCACAGAAGAATTCTATTATGGGTCTGAATGGACTGAGGACGAGAAGAAGAAGGGTCTGCACCAGCAGAGCATCAAGTTCGCTGAGAATAGCAGGTCCGAACGTGGCAGGAAAATTGCGTCAGCTCCAACCCCACCCAACGCCACTCCTTCCCATGTT 1587 58.48 GNVEGSPGSSMHGVTGREQTFAFSVASPIVPTDTSAKFALPVDSEHKAKVFKIFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSSPAGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLLMPLLYEIIKKVGATPFTAWRIAFFIPGSLHVLMGILVMTLGQDLPDGNLSSLQKKGTVAKDKFSNVLWYAVTNYRTWIFVLLYGYSMGVELSTDNVVAEYFYDRFDLKLHTAGIIAATFGMANLVARPFGGYASDFAARYFGMRGRLWTLWILQTCGGVFCMWLGKATQLPVAIVAMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTTKYSTDKGLFLMGIMIVCCTLPVTLVHFPQWGSMFLPPTKHVEKSTEEFYYGSEWTEDEKKKGLHQQSIKFAENSRSERGRKIASAPTPPNATPSHV 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9732734 9734401 + MC03g0332 Mch3g0556 683459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0556 529 MobiDBLite consensus disorder prediction 491 529 - -
Mch3g0556 529 FunFam High affinity nitrate transporter 56 253 - -
Mch3g0556 529 SUPERFAMILY MFS general substrate transporter 58 459 IPR036259 -
Mch3g0556 529 Gene3D MFS general substrate transporter like domains 57 252 IPR036259 -
Mch3g0556 529 CDD MFS_NRT2_like 64 457 IPR044772 GO:0015112(InterPro)
Mch3g0556 529 Gene3D MFS general substrate transporter like domains 263 465 IPR036259 -
Mch3g0556 529 Pfam Major Facilitator Superfamily 68 424 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Mch3g0556 529 FunFam Nitrate transporter 2.1 264 465 - -
Mch3g0556 529 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 7 513 IPR044772 GO:0005886(PANTHER)|GO:0015112(InterPro)|GO:0015112(PANTHER)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
Mch3g0556 529 MobiDBLite consensus disorder prediction 491 512 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0556 Mch-Chr3:9732734 Mch9g2263 Mch-Chr9:22953763 2.04E-212 dispersed
Mch3g0556 Mch-Chr3:9732734 Mch3g0557 Mch-Chr3:9741393 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0556 K02575 - csv:101218244 1023.85