Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0581 ATGGAAAATAGTTATGGGTTTGTTGAGGCGCATCATGTTGCTCAACAAAGGCGGCGTCAAAAGCTAAGAGTTGCACAAAATGTGGATATTCATGAAGGTTTCAAGAACAATGGGATTTTGGGGTCTGATCATAATCAAGCTATGATGATGATCAATTTCTCCTCCAGAGATCATTTGGGGAATCACGACGACGATGCAGAGGCGTCATCATTTTCGACTTGTTATGATCCCCAGCAGCAAAGTTGTGATTGGGTGGTGAACTGTGGGAGTGAGTCTATGTTGAGTGATCACATTGGGTTCCAAAAGGGTGTGGGAGATGCAGAATTATTGTTGCAATTTCCTGCTCCTGCTCCTCCGCCGCCCCCGATTTACCCGAATTCGCTCGAGGAAATGACGGTCGTTGTGCAGCATAACTTCACAGAGATCAACCAAGAACAGGAGGAAGGTGGGAGTAGAAATCAGGGCCATTTGTTGGGTGGTTATGACACTGCTTCTTGGATGGACAGAGGAGCTAATTTCTATAATAACTGCCGTGGTTGGGGTGGTGATCAATTGAGAAAAAGTAGTGATGAACATGATCATAAATTGAGGAGTTTCAGTTTCATGAGTTGTGATTCCAATCCTCAGGCTCTATCGCTCTCGCTCTCGTCAAATCCGTCCTCGAAATTGCCTGCCAACACTGCTCAGTTTGTTGAAGATCGTCCCGCGGAGGAGTTGTTGCAGGGAAGTGTAAGGAAAAATAATGTTAAGGCTGAGAGTTTAATGTGTAGATTGCCGAAGCCATCATCATCAAATTATGGGAAGTCTCTTCAAGATCATGTGGCCGGGGTTGTTGTTCCTGTGAACTCGTATCGGAACACTGGTCCGCTTGGTCCCTTTACCGGATACGCCACCATTTTGAAGAGTTCTAAGTTTTTGAAGCCGGCTCAGTTGTTGTTGGATGAATTTTGTGGCTCCAATGGCCACAATCACAAGTTTGTGGAACCATGTACATCTGATGCAGCCCTTAATGAGCTTAGAAATGAGGCTGTAGTTAACTCCGGGAATAGTTCGTGTCAGGAAGCCTCTACTTTCTGCGGTTCGAACGAAACAAATGTGAGTGGAGTTGGAAGCATCTCTTCGGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTGTGTATATGCTAGAGGAGGTTTGCAGAAGATACAAACAGTACAATCAGCAAATGCAAATGGTTGTTTCCTCCTTTGAATCAGTGGCTGGTCTTAGTTCTGCAACCCCCTACATTTCCCTGGCTCTCAACACAGTCTCGCGACACTTCCGGTGCCTGAAAAACGCCATCTCGGACCAATTGAAGTATCTCAGGAAGGCACTGGGGGAGGATTTGCCATCCCCTTCACCCGGGACGAGCGGCGCCAGTGGCGATCCGAATTTGGCCCGGCTCAAATACAACAATACGGAGCAGAAATCTGGTCTTGTTAACAACATGGGATTCCTCGAGTCCCAACACGTGTGGAGGCCACAGAGAGGTTTGCCAGAACGTGCTGTGGCCATTCTTAGAGCCTGGCTCTTCGAGCATTTTCTTCACCCGTACCCCACGGACACAGATAAGCACATGTTAGCCACTCAAACGGGGCTATCTCGAAACCAGGTGTCTAATTGGTTCATAAATGCTCGAGTTCGGGTTTGGAAGCCAATGGTGGAAGAAATACACATGCTAGAAACCAAAGGCTTGACAGAAATGAACAAAATCCATGCTACCAATAAAGATGGAAGCTGTACAATAGAGAACAACACAGCTGGTTGGAGCAGCAGTAATGAGCAACAACATGATCCTCTAAAAAGCCATGATGCTGTAAATGAAATTGTTGCCAATCATCACAGAAATGGCCTTTCCAGCGACCCCAAATTGGGCATGGATGGGGAATTGATGGGCTTCATGCCATATCGGCCGAGCGGGGTCGAGGTTGGAGGCCTCGGAGCTGTGTCTCTGACATTAGGCCTTCGCCACCGTGAGAGTGCTCAGCAGCAGCAGCAACGGCGCCAATTGCAGGCACAAGATGACCAGCTCGTACGCCACTTCGGAGGCGAAATGATCCATGATTTCGTGGGGTAA 2106 47.48 MENSYGFVEAHHVAQQRRRQKLRVAQNVDIHEGFKNNGILGSDHNQAMMMINFSSRDHLGNHDDDAEASSFSTCYDPQQQSCDWVVNCGSESMLSDHIGFQKGVGDAELLLQFPAPAPPPPPIYPNSLEEMTVVVQHNFTEINQEQEEGGSRNQGHLLGGYDTASWMDRGANFYNNCRGWGGDQLRKSSDEHDHKLRSFSFMSCDSNPQALSLSLSSNPSSKLPANTAQFVEDRPAEELLQGSVRKNNVKAESLMCRLPKPSSSNYGKSLQDHVAGVVVPVNSYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSNGHNHKFVEPCTSDAALNELRNEAVVNSGNSSCQEASTFCGSNETNVSGVGSISSESHQPEYQQKKAKLVYMLEEVCRRYKQYNQQMQMVVSSFESVAGLSSATPYISLALNTVSRHFRCLKNAISDQLKYLRKALGEDLPSPSPGTSGASGDPNLARLKYNNTEQKSGLVNNMGFLESQHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGLTEMNKIHATNKDGSCTIENNTAGWSSSNEQQHDPLKSHDAVNEIVANHHRNGLSSDPKLGMDGELMGFMPYRPSGVEVGGLGAVSLTLGLRHRESAQQQQQRRQLQAQDDQLVRHFGGEMIHDFVG 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10113997 10119337 + MC03g0353 Mch3g0581 683484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0581 701 SMART HOX_1 502 566 IPR001356 GO:0003677(InterPro)
Mch3g0581 701 ProSiteProfiles 'Homeobox' domain profile. 499 562 IPR001356 GO:0003677(InterPro)
Mch3g0581 701 SMART prehox3 294 446 IPR006563 -
Mch3g0581 701 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 241 600 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch3g0581 701 FunFam BEL1-like homeodomain protein 9 505 567 - -
Mch3g0581 701 CDD homeodomain 502 563 IPR001356 GO:0003677(InterPro)
Mch3g0581 701 Pfam Homeobox KN domain 519 558 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch3g0581 701 Pfam Associated with HOX 299 445 IPR006563 -
Mch3g0581 701 Gene3D - 505 567 - -
Mch3g0581 701 SUPERFAMILY Homeodomain-like 504 568 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0672 Mch-Chr1:10817069 Mch3g0581 Mch-Chr3:10113997 4.35E-70 dispersed
Mch3g0581 Mch-Chr3:10113997 Mch5g1540 Mch-Chr5:16429301 2.63E-62 dispersed
Mch3g0581 Mch-Chr3:10113997 Mch5g1880 Mch-Chr5:18907803 3.10E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42998 PF07526 POX 4.60E-43 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0581 - - - 0.0