Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0603 ATGGCCATGGCTATGGCCCATCACAGAGAGGGTGGCGATGGGGGTATCAACGGCCACCTTGACAGCTCCGGGAAGTACGTCCGGTACACGGCGGAGCAAGTGGAGGCTCTGGAGCGAGTCTATGCGGAATGTCCTAAACCGAGCTCTTTGCGCCGCCAGCAGCTGGTTCGCGATTGCCCCATTTTGGCCAACATCGAGCCAAAGCAGATCAAAGTCTGGTTCCAGAACCGCAGGTGTAGAGAGAAGCAGAGGAAAGAGGCTTCTCGTTTACAGTCACTGAACAGTAAACTGACGGCCATGAACAAGCTGTTGATGGAGGAGAATGATCGGTTGCAGAAACAAGTGTCTCAGCTCGTCAGTGAAAATGGGTGTATGCGGCAACATTTGCAAACTGCTAATGCACCGGCAGCGACAACTACTGATGCAAGCTGTGATTCAGTGGCTGCCACCCCTCAGCATTCACTTAGAGATGCTAGTAACCCTGCTGGACTCCTGTCTTTTGCAGAGGAGATTTTGGCAGCCTTCCTGTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTGGGAATTTTTGCCATTTCGCAAAGTTGCAGTGGAGTGGCTGCTCGAGCCTGTGGTCTTGTCATACTTCTGCAGATTACAGAGATCCTAAAAGATCGTCCATCTTGGTTCCGTGATTGCCGAAGCCTTGAAGTCTTTACGACATTCCCCACTGGTAATGGAGGGACGATCGAACTTGTTTATACACAGGTTTACGCTCCTACGACATTAGCGCCTGCCCGAGATTTTTGGACTCTAAGATACACCAGAACTTTGGAAAATGGCAATCTTGTGGTTTGTGAAAGATCTCTGTCCGGATCTGGCACTGGGCCTAATGCTGCTTCTGCCGCTCAGTTTGTGAGAGCTGAAATGCTTCCCAGTGGCTATTTGATTCGTCCGTGCGAGGGTGGAGGTTCAATCATCCACATTGTAGACCACCTAAATCTTGAGCCCTGGAGTGTACCAGAGGTAGTACGACCGCTTTACGAGTCGTCAAAGGGCGTGGCCCAGAAAATGACTATAGCAGCTCTTCGTTACGTTAGGCAAATTGCTCAGGAGACTAGTGGTGAAGTAGTATACAGTCTAGGCAGGCAACCGGCCGTTCTTCGAACTTTTAGCCAAAGATTGAGCAGAGGATTTAATGATGCTGTCAATGGATTTAATGATGATGGGTGGTCTTTGATCAATTGTGATGGAGCTGAAGATGTGACCCTTGCCATAAATTCAAGCAAGAATTTAAATACATCATATGATCCAGTCAATTCTCTTGCATTCCATGGGGGAATCCTTTGTGCAAAGGCTTCCATGCTTCTCCAAAATGTTCCTCCCATTGCTCTAATTCGCTTCTTGAGAGAGCATCGTTCCGAGTGGGCTGATTTCAACGCCGATGCATATTCTGCTGCTTCATTGAAAACCGGTTCATATGCTTACCCGGGAATGAGACCGACCAGGTTTACGGGGAGCCAAATCATCATGCCGCTCGGGCATACAATTGAACAAGAAGAGTTGCTTGAAGTTGTGAGGCTTGAAAGCCACCCTCTTGCTCAAGAAGATGCTTTTATGTCCGGGGACATCCATCTCTTGCAGATGTGTACTGGAATAGATGAGAATGCGGTCGGGGCGTGTTCCGAACTTGTGTTTGCTCCGATTGATGAGATGTTTCCTGATGATGCTGTGCTGCTGCCTTCTGGTTTCAGGATCATCCCATTGCATTCTAAAACAGGTGACCCAAAAGATGCATGGAACTCAAACAGAACTCTAGATCTTACTTCAAGTCTTGAACTTGGCTCATATGCTCCCCAAGATTCTGCTGCTGCATCAACTTCTCATAATTTCAGGTCGGTTTTGACCATCGCTTTCCAGTTCCCGTTCGGTAGCAACCTGCAGGACGACGTTGCAGCAATGGCGAGACAGTATGTTCGGAGTGTCGTCTCTGCCGTGCAGAGGGTTGCAGTCGCCATATCTCCCTCTGGATTAAGCTTGCCCCGAGAACCGAAACTATCATCTGCTTGTCCAGAAGCCCTTACACTGGCTCAATGGATCTGCCATAGCTACAGATGCCATACGGGAACAGAATTGGTGCCATCAGAGGGTGTGGATAATGACTCGGTGTTGAAAAATCTATGGACTCATCAGGATGCATTTCTGTGCTGTTCCCTTAAGTCATTGCCCCCAGTGTTCATGTTTGCAAACCAAGCAGGACTTGACATGTTGGAGACAACCTTAGTTGCCTTACAAGACATCACTTTGGATAAGATTCTTGGTGATTCTGCCCGCAGGGCTTTCTCTGCTGATTTTTCCAACTTAATGCACCAGGGCTTTGCTTACATTCCTGCTGGAATCTGCATGTCGACGATGGGGCGCCATGCTTCCTTTGAACAGGCCATTGCATGGAAAGTCCTTGCAGAAGATGAGTCTACTGTGCACTGTCTTGCCTTGTCCTTCGTCAACTGGTCGTTTCTGTGA 2538 48.9 MAMAMAHHREGGDGGINGHLDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVSENGCMRQHLQTANAPAATTTDASCDSVAATPQHSLRDASNPAGLLSFAEEILAAFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVILLQITEILKDRPSWFRDCRSLEVFTTFPTGNGGTIELVYTQVYAPTTLAPARDFWTLRYTRTLENGNLVVCERSLSGSGTGPNAASAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEPWSVPEVVRPLYESSKGVAQKMTIAALRYVRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINCDGAEDVTLAINSSKNLNTSYDPVNSLAFHGGILCAKASMLLQNVPPIALIRFLREHRSEWADFNADAYSAASLKTGSYAYPGMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDAFMSGDIHLLQMCTGIDENAVGACSELVFAPIDEMFPDDAVLLPSGFRIIPLHSKTGDPKDAWNSNRTLDLTSSLELGSYAPQDSAAASTSHNFRSVLTIAFQFPFGSNLQDDVAAMARQYVRSVVSAVQRVAVAISPSGLSLPREPKLSSACPEALTLAQWICHSYRCHTGTELVPSEGVDNDSVLKNLWTHQDAFLCCSLKSLPPVFMFANQAGLDMLETTLVALQDITLDKILGDSARRAFSADFSNLMHQGFAYIPAGICMSTMGRHASFEQAIAWKVLAEDESTVHCLALSFVNWSFL 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10446956 10457554 - MC03g0370 Mch3g0603 683506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0603 845 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Mch3g0603 845 Gene3D - 19 91 - -
Mch3g0603 845 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
Mch3g0603 845 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Mch3g0603 845 Pfam START domain 167 373 IPR002913 GO:0008289(InterPro)
Mch3g0603 845 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Mch3g0603 845 CDD START_ArGLABRA2_like 161 375 - -
Mch3g0603 845 SUPERFAMILY Bet v1-like 167 376 - -
Mch3g0603 845 Pfam MEKHLA domain 700 844 IPR013978 -
Mch3g0603 845 Coils Coil 90 121 - -
Mch3g0603 845 CDD bZIP 77 116 - -
Mch3g0603 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 845 IPR044830 GO:0003700(InterPro)
Mch3g0603 845 ProSiteProfiles START domain profile. 157 383 IPR002913 GO:0008289(InterPro)
Mch3g0603 845 Gene3D - 206 379 IPR023393 -
Mch3g0603 845 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Mch3g0603 845 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Mch3g0603 845 SMART START_1 166 374 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0603 Mch-Chr3:10446956 Mch3g0939 Mch-Chr3:13279452 0 dispersed
Mch2g0351 Mch-Chr2:2628845 Mch3g0603 Mch-Chr3:10446956 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43000 PF01852 START 1.50E-45 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0603 K09338 - rcu:8266275 1338.55