Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0609 TCGCAAAATCCCTTGGTTTCATCCCCAAACCATGAAACCCTACACCACCTCGATTCCTTTGGCTCCCATTCCACCTCTCTCCTTCACAACCTCTCAATTGTGAAGGAGAAACTCCACCAAATCCGATCCGTTGTCAACATCGTCATCTGCAACCATCAAAACTCGCCCGAGTCTCTACCCGCGCTGTCGTCGCCTGTGGCGACGGTAGCCATCAACTCTATGGTCCAAGAACTCATCATGACTGCTTCCTCCATGTTGTTCACTTGTCAACAGATGAACAACCTCGTCGTCAACTCCTCTGTCCGCAACGATATTATCGTCGACGATCTCCATCGTCAAGGTCTCGCCGACAACAACCGATCCACCGCCCTCTTTGACATGGCGAGCAACCACCCCGACCACAACGAGTGGTATAACAACATGACAACGACTTATAACAACAACAACGACTGCTACAACAATAGTAGAATTGAAGAGACGACGACGACGACGACGACAACGATACAGAATCATCGGATTTCGGCCGATATCGTGGAGCTAGAGGCCTCTGATCTTCTAGCCAAGTACACGCATTACTGTCGAATTTGCGGGAAAGGGTTGAAGCGAGACGCAAACCTGAGAATGCACATGCGAGCGCACGGGGACGAGTACAAAGCGAGCGGAGCTTTGAGCAACCCGGAGAGGAGCCAAGGGAGGGACTTGAAGGTAACAAAGATGGGGACCAAATATTCATGCCCACAACAAGGCTGCAGATGGAACCAAAAGCATGCCAAGTTTCAGCCATTGAAGTCACTCATTTGTGTGAAGAATCACTACAAGAGAACCCATTGCCCCAAAATGTATGTCTGCAAACTCTGCAGTAGGAAGAAATTTTCAGTGCTTTCTGATCTCAGGACTCATGAGAAGCACTGTGGGGATGTCAAATGGCTCTGTTCTTGTGGAACCACATTTTCAAGGAAGGATAAGTTGATGGGTCATGTTGCTTTGTTCGTCGGTCATGCTCCGGCGATCGGTTCATCGGCGAATTTTCGGGGCAAA 1038 49.42 SQNPLVSSPNHETLHHLDSFGSHSTSLLHNLSIVKEKLHQIRSVVNIVICNHQNSPESLPALSSPVATVAINSMVQELIMTASSMLFTCQQMNNLVVNSSVRNDIIVDDLHRQGLADNNRSTALFDMASNHPDHNEWYNNMTTTYNNNNDCYNNSRIEETTTTTTTTIQNHRISADIVELEASDLLAKYTHYCRICGKGLKRDANLRMHMRAHGDEYKASGALSNPERSQGRDLKVTKMGTKYSCPQQGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFVGHAPAIGSSANFRGK 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10522440 10523477 + MC03g0375 Mch3g0609 683512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0609 346 ProSitePatterns Zinc finger C2H2 type domain signature. 193 213 IPR013087 -
Mch3g0609 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 191 218 IPR013087 -
Mch3g0609 346 Gene3D Classic Zinc Finger 170 247 - -
Mch3g0609 346 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 21 340 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Mch3g0609 346 SMART c2h2final6 191 213 IPR013087 -
Mch3g0609 346 SMART c2h2final6 281 303 IPR013087 -
Mch3g0609 346 SMART c2h2final6 243 276 IPR013087 -
Mch3g0609 346 SUPERFAMILY beta-beta-alpha zinc fingers 189 216 IPR036236 -
Mch3g0609 346 Gene3D Classic Zinc Finger 279 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1547 Mch-Chr11:12887380 Mch3g0609 Mch-Chr3:10522440 1.07E-76 dispersed
Mch1g1412 Mch-Chr1:15933667 Mch3g0609 Mch-Chr3:10522440 2.11E-68 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43001 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0609 - - - 0.0