Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch3g0613 ATGGGCCAGATCCAGTACTCCGAAAAGTATTTCGACGATACCTATGAATACAGGCATGTGGTGCTTCCCCCGGAAGTCGCTAAACTTCTCCCCAAGAATCGCCTTCTTTCCGAAAACGAATGGCGGGCGATCGGGGTTCAGCAGAGCCGGGGATGGGTCCACTACGCAATCCATCGCCCAGAGCCGCACATTATGCTGTTCAGGAGGCCACTCAACTATCAGCAGCAGCAGGAGAATCAAGCGCAGCAGATTATGGCCAAG 261 54.02 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQIMAK 87
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10540464 10540982 - MC03g0379 Mch3g0613 683516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch3g0613 87 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Mch3g0613 87 Gene3D - 1 84 IPR036858 GO:0016538(InterPro)
Mch3g0613 87 SUPERFAMILY Cell cycle regulatory proteins 1 81 IPR036858 GO:0016538(InterPro)
Mch3g0613 87 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
Mch3g0613 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Mch3g0613 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Mch3g0613 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Mch3g0613 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Mch3g0613 87 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Mch3g0613 87 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Mch3g0613 87 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 84 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0301 Mch-Chr2:2288561 Mch3g0613 Mch-Chr3:10540464 2.19E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch3g0613 K02219 - zma:100280869 160.614